Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 seq5 86.0 7e-12 >seq3 Length=2984533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| |||||| ||||| |||| |||||||||||||| || | ||| Sbjct 1855127 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1855068 Query 119574 TTTAGCCAAAAGAT---GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCG 119630 || | ||| ||||| ||| || ||| | || ||||| |||||||||||| |||| Sbjct 1855067 TTCAACCAGAAGATTGAGGCGAAAGAAC---CGGAGAAGAAAATGCCCTCCACAGCGGCG 1855011 Query 119631 AAAGCGAATAGACGCTCAGCAAA 119653 || |||| || ||||||||||| Sbjct 1855010 AAGGCGACTAATCGCTCAGCAAA 1854988 >seq5 Length=2172826 Score = 86.0 bits (94), Expect = 7e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 || ||||||| ||| |||| | ||||| ||||| ||| ||| || || ||||| Sbjct 491771 GCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACAG 491712 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 | | || || |||| || || ||||| || ||| | || || || || || || Sbjct 491711 TTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACAC 491652 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 || || |||||| || || ||||| ||||||||||| |||| || ||| |||| Sbjct 491651 GAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAG 491592 Query 111043 AGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCG-GAGGGTACATCTTTACCGTGAAT 111101 || || ||||| |||||| || || | ||| || | ||||| |||||||| Sbjct 491591 TAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCG-ACATCAGCGCCGTGAAT 491533 Query 111102 ACCAATGGCAACTCGCATGAACAT 111125 ||| | || || ||||||| ||| Sbjct 491532 ACCGACAGCTACGCGCATGATCAT 491509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975896929200