Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 215 6e-51 >seq3 Length=2984533 Score = 215 bits (238), Expect = 6e-51 Identities = 399/580 (69%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 18941 GAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCA 19000 ||||||| | |||| | ||| |||||||| || | || ||||| | ||| |||| Sbjct 1852800 GAAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCA 1852859 Query 19001 ATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAG 19060 ||| |||||||| |||||||||||||| || |||| ||| || | |||||| || |||| Sbjct 1852860 GTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAG 1852919 Query 19061 CAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 |||| ||||| || ||||| || |||||||| ||||| || || || | || || Sbjct 1852920 CAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA- 1852978 Query 19121 AACTAGCATCATT-ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 ||| ||| || || | ||||| | || ||||| || | ||||| || || ||| Sbjct 1852979 AACGTCGATCGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCAT 1853038 Query 19180 GGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCA 19239 || || ||||| || ||||| || || | ||||| | | || || || | | Sbjct 1853039 GGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTA 1853098 Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || || | | | ||| |||| || ||||| ||||| || ||||||||||| ||| Sbjct 1853099 TCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAA 1853158 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 ||||| | |||| | |||||||| || |||| | || |||| ||| || || Sbjct 1853159 AAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTG 1853218 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCA 19416 || || || || ||| ||||||||||| | |||| | || |||| ||| | | Sbjct 1853219 ACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTA 1853278 Query 19417 TC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTG 19474 || | |||||| ||||||| || |||||||| || | ||| | ||||| | Sbjct 1853279 TCATTCAGGTTA--TTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACG 1853336 Query 19475 TCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||||| ||||||| ||||| || ||||| | ||| || Sbjct 1853337 TCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108701630960