Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 118 8e-22 seq6 96.9 3e-15 >seq1 Length=3168126 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 ||| ||| || ||||||||||| ||||| |||||||| || || | ||| |||| |||| Sbjct 2213293 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2213234 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 | ||||| || ||||| ||||| || || || |||| || | ||| |||||||| || Sbjct 2213233 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2213174 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 |||| || ||| | | | | || || | ||| ||||||| ||| ||||| || | Sbjct 2213173 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGC 2213114 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | || || || || |||||||| Sbjct 2213113 CTGTGAGGGTCTTGACGAAGATCTGCAT 2213086 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || |||||||| || ||| |||| | || ||||||||||| || || || Sbjct 2212764 CTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2212705 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || || || || | |||| || |||||||| |||||| || || Sbjct 2212704 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 2212645 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||| ||||| | || ||||| || || ||||| || ||||| Sbjct 2212644 GTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTAC 2212585 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 2212584 GAAAATCTGCAT 2212573 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || || | || | || || | |||||| || ||||| Sbjct 2213049 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2212990 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||||||||||| || | ||||||||| || ||||| ||| ||| Sbjct 2212989 AATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATT 2212930 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || |||| ||| ||||||| || || || || || |||| ||||| || Sbjct 2212929 ATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 2212870 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 2212869 AAAGATCTGCAT 2212858 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 48558 ACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| ||| || || ||| || || |||||||||||||| || | || | || || Sbjct 2212502 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2212443 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||| ||||| || || || || ||||| || || | || | ||||||||||| Sbjct 2212442 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2212383 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || ||| | | || || || | |||||| || | || || || || Sbjct 2212382 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2212323 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || || || |||||||| Sbjct 2212322 GCCCGTCAATGTCTTGACGAAGATCTGCAT 2212293 >seq6 Length=2225400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 ||||||| || || ||| || ||||| || || ||||| || | || |||| || | Sbjct 324203 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 324144 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 |||||| || || || |||| ||||| || || | ||| | |||||||||||| | Sbjct 324143 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 324084 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 |||| || || | | | | || || | ||||||||| | ||| ||||| |||| Sbjct 324083 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 324024 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || || || || |||||||| Sbjct 324023 CAGTCAACGTCTTCACGAAGATCTGCAT 323996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937535002522