Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 199 7e-46 >seq3 Length=2984533 Score = 199 bits (220), Expect = 7e-46 Identities = 377/553 (68%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || ||||| | |||| || ||||| || |||||||| | ||||||||| Sbjct 1855152 CAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAGGT 1855093 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||| |||||||||| || | || || | |||||| |||| |||||||| || ||||| Sbjct 1855092 GAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAA 1855033 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| ||||||||||| || ||||| ||| | | ||| | || | | | || Sbjct 1855032 GAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGATC 1854973 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||| || |||||||| |||||| | |||| || || || ||||| | || Sbjct 1854972 GGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGC 1854913 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 || || | || || | | |||| | || ||| || || | ||| Sbjct 1854912 ATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTA 1854853 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||| ||| | ||| || || || ||||||||||||||| | |||||| Sbjct 1854852 GGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCCTCAGC 1854793 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | |||| || || | ||||| | ||| | || ||||| ||||| || ||||| || || Sbjct 1854792 CGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGC 1854733 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----AT 48602 |||||| || || |||||||| | || || ||||| |||| | | || || || Sbjct 1854732 AGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAG-GCGGTTAT 1854674 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| | || | ||||| |||||||| |||||| | |||||||| ||||| | Sbjct 1854673 TCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGCTTCAG 1854614 Query 48663 CTTTTTTGTACAT 48675 |||| |||||||| Sbjct 1854613 CTTTCTTGTACAT 1854601 Score = 159 bits (176), Expect = 6e-34 Identities = 372/556 (67%), Gaps = 19/556 (3%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||| || |||||| ||||||||||| || || || |||| || ||| | | Sbjct 1852820 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1852879 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || |||||||| |||| || ||||| || ||||||||| Sbjct 1852880 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1852939 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTG-TCTG 48308 || || || || || |||||||| | |||| | || | || || ||| || | Sbjct 1852940 ATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACG--TCGATCGTTGATCAG 1852997 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || ||||| || | ||||| ||||| |||||| || ||||| || | Sbjct 1852998 AGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAAT 1853057 Query 48369 GGAAGAGCTTCTTGCACTCAC-CTGC-----GTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 |||||| | | |||| |||| ||| | || |||||| || || | Sbjct 1853058 TGAAGAG------GAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGAG 1853111 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||| | || ||||| | || || || |||||| || || || || | | | | Sbjct 1853112 AGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCGGACTT 1853171 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 || | || ||||| | || || | ||||| ||||||||| ||||| || || || | Sbjct 1853172 CAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGG 1853231 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AG 48599 |||| ||||| || || ||||||| | | ||||||||| ||||| | | || | Sbjct 1853232 AAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTAT 1853291 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 ||||||| | | |||||| || || | ||||| ||||| || || || Sbjct 1853292 TATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCT 1853351 Query 48660 GTGCTTTTTTGTACAT 48675 | ||||| |||||||| Sbjct 1853352 GGGCTTTCTTGTACAT 1853367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532636981760