Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 136 7e-27 >seq3 Length=2984533 Score = 136 bits (150), Expect = 7e-27 Identities = 358/540 (66%), Gaps = 11/540 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| ||| || || ||||||||||||||| || || ||| Sbjct 1854592 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1854651 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | || || | ||| |||| | ||| || | | | | |||| || ||| || Sbjct 1854652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1854710 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | || | || || ||||| |||||||||||||| || |||||||| || ||| | Sbjct 1854711 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1854770 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1854771 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1854830 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770 |||||| | ||| ||| || || ||| | ||| || ||||| | ||| Sbjct 1854831 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1854889 Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | ||| | || |||| ||| | ||| ||| ||| | |||| |||||||| Sbjct 1854890 AGCAACGCGAGTAC--CTTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1854947 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | ||||| | |||||| | | || | || |||| ||||| | || || Sbjct 1854948 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1855007 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| || |||||||||||||| || ||| |||||| || || | ||||||||| | || Sbjct 1855008 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1855067 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||| ||||| || |||||||| | |||||||| Sbjct 1855068 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1855127 Score = 123 bits (136), Expect = 5e-23 Identities = 379/571 (66%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||| || || || ||||| |||||||||| ||| || Sbjct 1853376 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1853317 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGA---CGAGCAGCATTT--TCT 25589 |||| || || || |||| | | | || || || ||| | ||||| | | Sbjct 1853316 TCCAAAGATATCTTCGACTGGAATAAT--AACCTGAATGATAACGAACGCCATTTCATAT 1853259 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 || || || ||||||| ||||| || || || ||||| || |||||||||||| || Sbjct 1853258 CA--TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1853201 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | || | || ||||| || || || | | ||||| || || || ||||| Sbjct 1853200 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAGATCAT 1853141 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768 || ||||| | ||||| || || | || | ||| || |||||| | ||| Sbjct 1853140 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATTTCTGAC- 1853083 Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 || | | || | || || || | | |||||| ||||| || ||||| |||| Sbjct 1853082 TCTCAGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1853023 Query 25828 GCGCGGTGGGCCATGAAGTGGATC----AACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 | ||||||| | | ||||||| | || | || || ||||||| | | || | Sbjct 1853022 ACCGAGTGGGCCCTCAGGTGGATCTCTGATCAAC--GATCG--ACGTTTGCCACGAGGTT 1852967 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 ||| || || || || || || || ||||| ||| ||| || ||||| | |||||||| Sbjct 1852966 GGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1852907 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||| ||| | | | || | |||||| || | |||||| ||||| || || || ||| Sbjct 1852906 GCTGAAGAA-ACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGG 1852848 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 |||| || | |||| |||||||||||| || Sbjct 1852847 ACGAAGGGATGCACACAGATTTTGCCTGTCT 1852817 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209 |||||||| || |||||| |||| ||||| |||| ||| || || | |||||| | Sbjct 1855320 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTGCTCATT 1855379 Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269 ||| || || || | | ||||| || | ||||| |||||||||||||| | | Sbjct 1855380 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACATGA 1855437 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 | || ||| | |||||||||||||||||||| ||| |||| Sbjct 1855438 TCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1855477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844637452160