Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 2e-13 seq3 84.2 3e-11 >seq9 Length=1635283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 13570 TGACGCGAACAAGGCGGGTACGGCACA---ATCTGGAAAGTGTACTCTCATTGTCACAGA 13626 |||||||||||| || || ||| | |||| || |||||||||||| |||| || Sbjct 1373284 TGACGCGAACAACGCTGGGACGAGGAATGCATCT---AAATGTACTCTCATTCTCACTGA 1373228 Query 13627 GGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTA 13686 || ||||| || ||| |||| || |||||||| | |||||| || || || ||| Sbjct 1373227 AGGAGATTCTGCCAAAGCCCTTGCTGTTGCGGGGTTGGGTGTCGTCGGGCGCGACAACTT 1373168 Query 13687 CGGTGTGTTCCCACTTCGCGGTAAA 13711 || || |||||||||||||||||| Sbjct 1373167 TGGAGTCTTCCCACTTCGCGGTAAA 1373143 >seq3 Length=2984533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 65064 TCGCTCC---TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 ||||||| || || ||||| | | || || || ||||||||| || |||||||| Sbjct 1854978 TCGCTCCACATTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTC 1855037 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 ||| || ||| | | || | |||||||||||||| || |||||||| || || ||| Sbjct 1855038 CGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTT 1855097 Query 65181 CTCAAATGAACTTAT 65195 ||| |||||||| || Sbjct 1855098 CTCCAATGAACTCAT 1855112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569495600320