Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 125 9e-23 seq5 96.9 4e-14 >seq3 Length=2984533 Score = 125 bits (138), Expect = 9e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| || || ||| ||| || ||||||||||| |||| | |||||| Sbjct 1855495 GCCTTCGAGTAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAGGAGATC 1855436 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || |||||||||||||||| ||||| | | Sbjct 1855435 ATGTCCATAAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCGAGGGCAATG 1855376 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || || || |||||||||||||||||||||||||| ||| |||||||| || Sbjct 1855375 AGCAGACGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATC 1855316 Query 868871 AGCGCCACCGGCAG 868884 ||| | || || || Sbjct 1855315 AGCCCTACAGGAAG 1855302 Score = 105 bits (116), Expect = 8e-17 Identities = 199/292 (68%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || ||||| |||||||| | ||| ||| |||| ||| || |||||||||| Sbjct 1855135 TATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGC 1855076 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 | |||||||| | ||| ||||| | | |||| || ||||| || |||||||| || | Sbjct 1855075 CACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAG 1855016 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 |||| ||| ||| | ||||| ||||| ||| | | | || | |||||| | Sbjct 1855015 CGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTA 1854959 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 |||||||| ||||| | | || | || | || || | || ||| |||| | Sbjct 1854958 GTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACT 1854899 Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || |||||||||| || || ||||| || || || |||||||| Sbjct 1854898 CGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTC 1854847 Score = 91.5 bits (100), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 868685 ACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 868744 || ||||| |||| || ||| || || ||| || ||||||||||| |||| || Sbjct 1852470 ACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTTCCCTGAAGG 1852529 Query 868745 GAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGC 868804 || |||| ||||| | ||| || |||| | || || ||||| | ||| || Sbjct 1852530 GAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTATAATGCTTGGAGTTTCCAAGA 1852589 Query 868805 GACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATG 868864 || | |||||||| || |||||||| || ||||| || | ||| ||| |||| ||||| Sbjct 1852590 GAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGGCATTCATT 1852649 Query 868865 CCGATGAG 868872 |||||||| Sbjct 1852650 CCGATGAG 1852657 >seq5 Length=2172826 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| ||||| || ||||||||||| || ||| |||||||||||||| || || || Sbjct 492055 TCCAGAGTGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCGTGATTTTTGCGGA 491996 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||||| | ||| || ||||||||||| ||||| |||||| ||||| || ||| Sbjct 491995 GGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGGTAGATTGCAAAAGCACCCG 491936 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||||| Sbjct 491935 GGCGCTTGTTACCGCC 491920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138051094438