Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-20 seq7 114 2e-19 >seq3 Length=2984533 Score = 118 bits (130), Expect = 2e-20 Identities = 222/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||| ||| ||| ||| || ||||||||||| |||||| Sbjct 1855127 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1855068 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | |||| || ||||| || |||||||| || ||||| ||| Sbjct 1855067 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1855008 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| | ||||| ||||| ||| | | || | |||||| | ||||| Sbjct 1855007 GCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTAGTGCCCAG 1854951 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | || |||| | || || | || ||| |||| || | Sbjct 1854950 TCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCAAAAAGGTACTCGCGTTGC 1854891 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||||| ||| || ||||| || || ||||||||||| |||||| ||||| Sbjct 1854890 TTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCC 1854831 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||| || || ||||| Sbjct 1854830 ATCATAATTTGGAACCCGTAGAAGCA 1854805 Score = 96.9 bits (106), Expect = 5e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 793890 GTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCG 793949 ||||| || ||||| | || || || ||| ||| || ||||||||||| |||| Sbjct 1855504 GTGACACCGGCCTTCGAGTAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGC 1855445 Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009 | ||||||| ||||| | ||| ||||| | || ||||||||| |||| ||| Sbjct 1855444 AAGGAGATCATGTCCATAAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCG 1855385 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || | ||||| || || || || || || ||||||||||||||||| ||| ||| Sbjct 1855384 AGGGCAATGAGCAGACGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTC 1855325 Query 794070 ATGCCGATGAGCGCCACGGGCAG 794092 ||||| || ||| | || || || Sbjct 1855324 ATGCCAATCAGCCCTACAGGAAG 1855302 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 793885 TCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGC 793944 |||||| || ||| |||| ||| ||| || || ||| || ||||||||||| | Sbjct 1852462 TCGATGCTACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTTC 1852521 Query 793945 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC 794004 ||| || || |||| ||||| | ||| || |||| | || ||||| | Sbjct 1852522 CCTGAAGGGAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTATAATGCTTGGAGT 1852581 Query 794005 ACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064 || || || |||||||||| || ||||| ||||| ||||| || | ||| ||||||| Sbjct 1852582 TTCCAAGAGAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGG 1852641 Query 794065 CGTTCATGCCGATGAG 794080 | ||||| |||||||| Sbjct 1852642 CATTCATTCCGATGAG 1852657 >seq7 Length=1576456 Score = 114 bits (126), Expect = 2e-19 Identities = 237/345 (69%), Gaps = 11/345 (3%) Strand=Plus/Minus Query 2175024 AAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGA--GCGCCGTTGCCACGCTGCCGT 2175081 |||| ||| || | | || | ||||| |||||||| ||| || | |||||||||| Sbjct 976542 AAGGCGTGCGGATTTGAGGATGAGCGCATGGCATCGACGGCGACGGAG--ACGCTGCCGT 976485 Query 2175082 CGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCT 2175141 |||| || ||||| ||||||| || || | | |||| || | ||||||||| | || Sbjct 976484 CGGTCCCATTTTTGAACCCGATGGGGAAGGAGACACCCGAGGCGAGTTCGCGGTGGAGCT 976425 Query 2175142 GGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCG 2175201 | |||||||||||||||||| | ||||||||| | || ||| || || | || ||| Sbjct 976424 GAGACTCGGTGGTGCGCGCGCCGATGGCGCCCCAGGACATGAGATCGGCAATGTACTGCG 976365 Query 2175202 CCACCAAAGGGCTGAGAAACTCGACAGCC-ACGGGCTGGCCGACGTCGACGACCAGGTCG 2175260 | | | | || | |||| |||| || || ||||| |||| | |||||| Sbjct 976364 GCGAGATGGTGTCAAGCAGCTCG-GAGCCGACTGGGACGCCGAGGTCGGTG---AGGTCG 976309 Query 2175261 CGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTC 2175319 | || || | || | | | || ||||| | | || | || ||||||| ||| Sbjct 976308 CAGAGGAGCTGGCG-GGCGAGACGCAGGCCCTTGTTGATCTGGAAAGAGCCGTCGATGTC 976250 Query 2175320 GGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTT 2175364 ||| || || ||||| ||||| ||||||||||||||||| || Sbjct 976249 GGGATCATTGATGAGGCCTTTCCAGCCGACGGTCGTGCGCGGTTT 976205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244910756146