Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 >seq1 Length=3168126 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || | ||||| || ||||||||| | || || || ||| || Sbjct 2212576 CAGAT-TTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCGGA 2212634 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||| |||||||| || || ||||| ||| || ||| || Sbjct 2212635 CACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCA 2212694 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| |||||||||||||| ||||| | ||| | ||||||||||| | Sbjct 2212695 ACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAACAT 2212754 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||||||||||| ||||||| Sbjct 2212755 CCAGAAAGAGTCTACTCTGCACCTTG 2212780 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || |||||||| ||||| || || ||| ||| Sbjct 2213089 CAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCGGAC 2213148 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||| || ||||||| ||| Sbjct 2213149 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAA 2213208 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| ||||| || || | || | | ||||||||| | Sbjct 2213209 CGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAACATT 2213268 Query 206353 CAGAAAGAG 206361 ||||||||| Sbjct 2213269 CAGAAAGAG 2213277 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| ||||| || || || ||| Sbjct 2212861 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCCGAC 2212920 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||||| || ||| || || || || || || ||||| || Sbjct 2212921 ACAATCGATAATGTCAAAGCGAA-GATCCAGGATAAGGAGGGCATCCCACCGGATCAACA 2212979 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | ||||| || || || |||||| | || ||||| |||| | |||| |||||| | Sbjct 2212980 GCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAACAT 2213039 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||| |||||||||||||| Sbjct 2213040 CCAGAAGGAGTCGACTCTTCACCTTGT 2213066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| ||| ||| Sbjct 2212296 CAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCGGAC 2212355 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 2212356 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 2212415 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || || ||| | || ||||| | || | | |||||||| || Sbjct 2212416 CGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAATATC 2212475 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| |||||||| ||||| |||| Sbjct 2212476 CAGAAGGAGTCTACCCTTCATCTTG 2212500 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 204765 CAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCA 204824 ||||||| ||||||||||||||||||| || || || | | ||| | ||||| |||| Sbjct 2212780 CAAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2212721 Query 204825 GCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||| |||||||| | |||||| || Sbjct 2212720 ACTGCTTTCCAGCGAAGATCAACCGTTGCTG 2212690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820588010894