Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 seq1 84.2 2e-11 >seq5 Length=2172826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 ||||| || || ||| ||| | ||| | || || || |||||||| | || ||| ||| Sbjct 491696 TAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 491637 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 | | || ||||| ||| || || || ||||| || || | || | ||| Sbjct 491636 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCAGACATT 491577 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | | || || ||||||||| |||| || |||||||||| || | || |||||| Sbjct 491576 AGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATACCGACAGCTACGCGC 491517 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTT 148350 |||| |||||||||||| ||||| || || | |||||| ||||| || | Sbjct 491516 ATGATCATGTGCTGTGGACGTTCTGCGACACGGCCATTGATCCGAAGAAGGTAAGAACGC 491457 Query 148351 TCGAGGGTTTTGTAACCAAAG 148371 || || || ||| |||||||| Sbjct 491456 TCCAGCGTCTTGAAACCAAAG 491436 >seq1 Length=3168126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||| |||||||| || || | | Sbjct 2213051 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2212992 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||||||||| || || ||||| || ||||| || || ||| | Sbjct 2212991 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2212932 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || || | || | || || |||||||| ||||| Sbjct 2212931 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2212872 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2212871 ACAAAGATCTGCAT 2212858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611116593040