Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-42 seq5 84.2 3e-11 >seq3 Length=2984533 Score = 188 bits (208), Expect = 1e-42 Identities = 368/540 (68%), Gaps = 14/540 (3%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | |||||| | |||||||||||| || | |||||||| ||||| || || Sbjct 1852841 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1852900 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || ||||| || || | |||||||||||| || |||||||| |||||||| ||||| || Sbjct 1852901 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1852960 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATT----ATGTATCCACTTCTGTGCCCAATC 39813 || || | ||| | ||| | ||| || | |||||| | | ||||| || Sbjct 1852961 GCCACCAACCTCGTGGCA-AACGTCGATCGTTGATCAGAGATCCACCTGAGGGCCCACTC 1853019 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 | |||| ||| || || || || || || || | ||| ||||| | | | | Sbjct 1853020 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTG 1853079 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || || || ||||| || | ||| || |||| || || |||||||| || Sbjct 1853080 AGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1853139 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | ||||||||||| |||||||| | |||||| |||||| || |||| | Sbjct 1853140 CATGATCTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1853199 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 ||| ||| ||| || || || || || || ||||||||||||||||| |||| | Sbjct 1853200 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1853259 Query 40054 AATAAAA------TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGA 40107 || ||| | || |||| | || | ||||||||||| ||||||||| || Sbjct 1853260 TATGAAATGGCGTTCGTTATCATTCAG-GTTA--TTATTCCAGTCGAAGATATCTTTGGA 1853316 Query 40108 TATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||||| | ||||| | ||||||||||| |||| || || |||||||| | ||| || Sbjct 1853317 CATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Score = 118 bits (130), Expect = 1e-21 Identities = 369/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || || Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||||||||| || |||||||| || | ||| || || | || ||||| || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 || ||||| ||||| || || || || || || || | || ||| | || || | | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1854979 Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || ||||| ||||||| || || ||| | || ||||| || || || || Sbjct 1854978 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTC 1854919 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 | ||||| ||| || || | || | | || || | || ||||| || | || Sbjct 1854918 AACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1854859 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || ||||| ||||| ||| || || || ||||| || || | || Sbjct 1854858 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1854799 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||||| | || | || | | || || || || || ||||| Sbjct 1854798 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATC 1854739 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080 | || |||||||| || | ||||| | ||| | |||| | || || Sbjct 1854738 AGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1854680 Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||||||||||| | || ||||||||| | || | |||||| || ||||| || |||| Sbjct 1854679 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1854620 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || || |||||||| | ||| || Sbjct 1854619 CTTCAGCTTTCTTGTACATTTGCCAGAT 1854592 >seq5 Length=2172826 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||| | || ||||| || |||| || || || || || ||| | || ||| | | Sbjct 491777 CCTGTAGCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATA 491718 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| |||| || ||||| || ||||| ||| || ||| ||||| || || Sbjct 491717 GCACAGTTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGG 491658 Query 69964 AAACAGCTAGA-CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 ||||| | || || |||| ||| || ||||| || || | ||| || || ||||| Sbjct 491657 AAACA-CGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTG 491599 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 |||||| | |||||| | || ||||| ||||||||||| || | ||| | | Sbjct 491598 AGTGAAGTAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCC 491539 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| || | || || ||||| | ||| ||||| || |||||| Sbjct 491538 G-TGAATACCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCT 491493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960