Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq6 123 8e-23 seq2 113 1e-19 >seq1 Length=3168126 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || |||||||||||||| || || || ||||| || | ||||||||||| || | Sbjct 2212780 CAAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2212721 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || |||||||| ||||| | |||||||| || |||||||| ||||| || ||||||| Sbjct 2212720 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2212661 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || ||||| | || || | || || || || || | ||||| | Sbjct 2212660 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2212601 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || ||||| ||||||||||| Sbjct 2212600 CTGTCAAGGTCTTTACGAAAATCTGCAT 2212573 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||| ||||| || || || || || || || ||||| ||||| || ||||| || Sbjct 2212273 ACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTACGGCCATCCTCG 2212214 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAAT 140632 || ||||||||||| || || |||||||| || || |||||||| Sbjct 2212213 AGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAAT 2212170 >seq6 Length=2225400 Score = 123 bits (136), Expect = 8e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||||||||| ||||| || || ||||| || || || | || || ||||| || ||| Sbjct 324711 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 324652 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || || || || || ||||| ||||| || || || || || |||||||| Sbjct 324651 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 324592 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || |||| ||||| | || || || || || | ||||| ||| Sbjct 324591 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 324532 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||| Sbjct 324531 GTCAGGGTCTTGACGAAGATCTGCAT 324506 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||||||||| ||||| || || || ||||| || || | || || || || || || Sbjct 323914 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 323855 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || || || | ||| ||||| || || || ||||| || || |||||||| Sbjct 323854 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 323795 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || ||||| || | || || | || || || || || | ||||| || Sbjct 323794 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 323735 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||| Sbjct 323734 GTGAGGGTCTTCACGAAGATCTGCAT 323709 >seq2 Length=2792455 Score = 113 bits (124), Expect = 1e-19 Identities = 268/401 (67%), Gaps = 3/401 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || || || |||||| | | || |||||||| | ||||| | || | Sbjct 1468203 CCCGAAGAGATCTCCTCGATGGTTCTCTTGAAGATGAAGGAGACCGCTGAGTCCTACCTC 1468262 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || || | || || | || || || || || ||||| || | ||||| Sbjct 1468263 GGCACGACCGTCACGAACGCCGTCGTGACGGTCCCCGCGTACTTTAACGACTCGCAGCGC 1468322 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| | || | || | || | || || || || Sbjct 1468323 CAGGCTACCAAGGACGCCGGAACCATCTCCGGAATGAACATCCTTCGTATCATCAACGAG 1468382 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTAT 349770 ||||| ||||| || ||||| || || || || || | | |||||| || || | Sbjct 1468383 CCCACCGCTGCCGCCATTGCGTACGGTCTCGACAAGAAG-GTGACCGGCGAGCGCAACGT 1468441 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || || || ||| | || || || ||||| ||||| ||||| || || | || ||||| Sbjct 1468442 CCTCATCTTCGATCTCGGAGGAGGAACTTTCGATGTGTCACTTCTTACCATCGAGGAGGG 1468501 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || || ||||||||||| || || | ||||| || || ||||| || Sbjct 1468502 TATCTTCGAGGTCAAGGCCACTGCTGGTGACACCCACTTGGGTGGTGAGGACTTTGACAA 1468561 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 || ||||| || ||||| | || || ||||| |||| Sbjct 1468562 CCGCCTCGTGAACCACTTTGTCCAGGAGTTCAAGCG-CAAG 1468601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254128201242