Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq3 87.8 2e-12 >seq5 Length=2172826 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| || |||| |||||| ||||| ||| | |||||||| || | ||| | | Sbjct 493242 ACGTCAAGGCAATCTACAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTCCTTGACCTCG 493301 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || || | |||| |||||| || || || || ||| | || || || Sbjct 493302 CTGCAGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 493361 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 ||| || | |||| | | ||||||| | ||||||||| | ||||||||||| | Sbjct 493362 CGACGCTCGGCCAGCTCACCAGCATGCATTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 493421 Query 20796 GCATGTACTATCTGCGGACCCG 20817 ||||||| || ||||| || || Sbjct 493422 GCATGTATTACCTGCGCACGCG 493443 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| ||| | ||||| | ||| Sbjct 492068 AAAAGATCGGGGATCCAGAGTGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 492009 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 || || || || |||| || || ||| ||||||||||| ||||| || ||||| Sbjct 492008 TGATTTTTGCGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGGTAGATT 491949 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | |||| ||||||| ||||| |||| ||| || || || || || | | Sbjct 491948 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGGTCGACATAGCGAGCAGTCGCGTCGTAC 491889 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGG 79594 | ||||||||||| || || |||| || Sbjct 491888 GCGCGGAGCATGGGAACAATACCGTTGG 491861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 79630 GCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCA 79688 ||||||||||| | | | | || ||| ||||| |||| | |||| ||| || || Sbjct 491771 GCCCGAATGTT-GTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACA 491713 Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC- 79747 | ||| || || || ||||| ||||| || ||||| || ||||| |||||||| | Sbjct 491712 GTTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACA 491653 Query 79748 --AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGT 79805 |||| || || || ||| ||||| ||||||||||| || || | ||||| || Sbjct 491652 CGAGCT---CAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGT 491596 Query 79806 GAAG-AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGT 79864 |||| ||| || | ||| || | ||| || || | |||| || || |||||| Sbjct 491595 GAAGTAACGTTCAG-ACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGT 491537 Query 79865 GGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | || ||||| || |||||||||| | || ||| || Sbjct 491536 GAATACCGACAGCTACGCGCATGATCATGTGCTGTGG 491500 >seq3 Length=2984533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332 |||||||| ||||||| || || || || ||| |||| ||| ||| | || | Sbjct 1855344 CAGTACATCGAGTTTGTTGCAGATCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1855401 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 || || || ||||| ||||||| ||||| | ||||| ||| | |||||||||||| Sbjct 1855402 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCCTTGCAGGGGAAGACCAAC 1855460 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||||||||||||||| |||||| || ||| Sbjct 1855461 TTCTTTGAGAAGCGGGTATCGGATTACTCGAAG 1855493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160