Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq1 159 4e-34 seq5 113 5e-20 seq8 93.3 5e-14 >seq6 Length=2225400 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 324506 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 324565 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 324566 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 324625 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||||||||||| || || || | ||||| ||| Sbjct 324626 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAAT 324685 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 324686 ATCCAGAAGGAGTCGACTCTTCATCT 324711 Score = 167 bits (184), Expect = 3e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 324781 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 324840 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || |||||||||||||| || |||||||| ||||| Sbjct 324841 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 324900 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || |||||||| || ||||| |||||||| | ||| ||||| | ||||| || Sbjct 324901 GCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 324960 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | |||| ||||| ||| ||||| || Sbjct 324961 TATCCAGAAGGAGAGCACCCTTCACCT 324987 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 323709 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 323768 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||||||||||||||| || || |||||| Sbjct 323769 GACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAG 323828 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| |||||||| | || ||||| | |||||||| Sbjct 323829 CAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 323888 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 323889 ATCCAGAAGGAGTCGACTCTTCATCT 323914 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 324278 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 324337 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || |||||||| ||||| || |||||| Sbjct 324338 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 324397 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | || || || | |||||||| Sbjct 324398 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 324457 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| | ||||| ||| | ||||| || || || Sbjct 324458 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 324504 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || || ||||| || || || ||||| |||||| | Sbjct 323996 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 324055 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 324056 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 324115 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| ||||| || | || ||||| | |||||||| Sbjct 324116 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAAC 324175 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| || || || ||| Sbjct 324176 ATTCAGAAGGAGTCGACCCTCCAT 324199 >seq1 Length=3168126 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || |||||||| || ||||| Sbjct 2212293 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2212352 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 2212353 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2212412 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || ||||||| || || || | || || ||| Sbjct 2212413 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2212472 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || |||||||| Sbjct 2212473 ATCCAGAAGGAGTCTACCCTTCATCT 2212498 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || | ||||| ||||| Sbjct 2212858 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2212917 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||| |||||||| || || || || || Sbjct 2212918 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2212977 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||||| || ||||| | ||||| || Sbjct 2212978 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2213037 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || ||| | ||||||||||| || Sbjct 2213038 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2213084 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 2212573 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2212632 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || |||||||||||||| || |||||||| |||||| Sbjct 2212633 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2212692 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| | ||||||| || || || | || || || Sbjct 2212693 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAC 2212752 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || || ||||| || || Sbjct 2212753 ATCCAGAAAGAGTCTACTCTGCACCT 2212778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/282 (65%), Gaps = 52/282 (18%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || ||||||||||| || || |||||||||||||| Sbjct 2212010 ATCATGCAGATCTTCGTTAAGACTCTCACCGGCAAGACCATCACACTTGAGGTTGAGTCT 2212069 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG------------- 27509 |||| ||| | ||| | ||||| || |||||||| |||||||| Sbjct 2212070 TCCGATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGTGGGTCCCTCGC 2212129 Query 27510 AA---------------------------------------TTCCTCCAGACCAGCAGCG 27530 || ||||||| ||||| || || Sbjct 2212130 AACGTGATCCCTAGTTTCATATCACTCATAGTCGCTTAGCATTCCTCCCGACCAACAACG 2212189 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| ||||| ||||| || || |||||||||| ||||| | | ||||| || |||| Sbjct 2212190 TCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACATTGTCTGACTACAACATCCA 2212249 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||||| ||||| |||||||| || || || || Sbjct 2212250 GAAGGAATCGACTCTCCATCTCGTCTTGCGCCTCCGTGGCGG 2212291 >seq5 Length=2172826 Score = 113 bits (124), Expect = 5e-20 Identities = 178/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 || || |||||||| | | ||| ||| |||||| |||| || ||||| ||| Sbjct 491750 AGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACAGTTCTTCAGAGTTTCATAGATT 491691 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA---GCTTGACATCTGAGGGCTT 81615 ||||| ||| |||| ||||||| || || |||||| ||| || ||||| | Sbjct 491690 CCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACACGAGCT---CAATTGAGGATTG 491634 Query 81616 TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGG 81675 || || || ||||| |||||||| | |||||| |||| ||||| | ||||| ||| Sbjct 491633 GGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCAGACATTAGG 491574 Query 81676 TCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATA 81735 | |||||||| | |||| | ||| | ||||||||||||| |||||| ||||| Sbjct 491573 TTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATACCGACAGCTACGCGCATG 491514 Query 81736 AACATGTACTGGGG 81749 | ||||| ||| || Sbjct 491513 ATCATGTGCTGTGG 491500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| ||||| || |||||||| |||||||| || |||||||||||| | ||||| Sbjct 493443 CGCGTGCGCAGGTAATACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAATGCATG 493384 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 |||||| | || || || || || | || ||| ||||| || ||||| ||| Sbjct 493383 CTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGCAG 493324 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAA 80185 ||||| || ||||| ||||| || | |||| Sbjct 493323 ATGAACGCTCCACGGTCTGCAGCGAGGTCAA 493293 >seq8 Length=1768214 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || |||||||| || ||||| ||||| || | ||| ||| Sbjct 404662 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 404603 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| || ||||| ||||||| || || || || || || ||| | ||||| ||||| Sbjct 404602 CTCAGC-GATTATAACATCCAAAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCGG 404544 Query 27630 TGG 27632 ||| Sbjct 404543 TGG 404541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310300195680