Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 159 3e-34 >seq3 Length=2984533 Score = 159 bits (176), Expect = 3e-34 Identities = 380/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| | ||| |||||||| |||| |||||||| | |||||||||||||||||| Sbjct 1852811 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1852870 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| || ||||| | ||||| || || ||||| || || | ||||| || || Sbjct 1852871 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1852930 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGC 4717 || ||||| || |||||||| || || ||||| || || | | | |||| | | | Sbjct 1852931 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGATCG- 1852989 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 || || ||||| | | ||||| | | || | ||| ||||| || || || | Sbjct 1852990 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1853049 Query 4778 TATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 || | || || || | || | | | | ||| ||| || || || || || Sbjct 1853050 GATCGAATTGAAGAGGAAGTCACGCTGCTGA---GAGTCAGAAATGTAGGTATCGATGAG 1853106 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 || || |||| || || || ||||| || ||||||||||| ||||| || | Sbjct 1853107 GAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCG 1853166 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 |||| | |||| |||||| | |||| | || || | || ||||| || ||||| Sbjct 1853167 GACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACC 1853226 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG 5014 ||| || |||||||| |||| |||| ||||| || | |||||| | || || Sbjct 1853227 GTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAG 1853286 Query 5015 ---TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || ||||||| | | |||||| | | ||| | ||||| ||||||||||| Sbjct 1853287 GTTATTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGA 1853346 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 || | ||||| |||||||| |||||| Sbjct 1853347 AGCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Score = 140 bits (154), Expect = 3e-28 Identities = 369/559 (66%), Gaps = 7/559 (1%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| || || || || || ||||| || ||||| | || || ||||| || || Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | ||| ||||| | || | ||| || | ||| || || | ||| || || || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| ||||| || || ||||| || || |||||||| | || | | | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1854978 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || ||||| || |||||||| || || | || || || ||||| || | Sbjct 1854977 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1854918 Query 4779 ATAGCGTTAAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 | ||| | ||| || |||| || | | || ||||| | ||||| || || || | Sbjct 1854917 ACAGCATCAAA-AAGGTACTCGCGTTGCTTAGGGTCCTTGA-TGTAAGTATCGATAAGAA 1854860 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 || || | || || |||||||| || ||| || || ||||| ||||| | | Sbjct 1854859 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1854800 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 | || | | ||||| ||||| | || | || || | ||| ||||| || ||||| | Sbjct 1854799 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCAT 1854740 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA--- 5013 || ||| ||||||||||| | ||||| || | ||||| | || | |||| Sbjct 1854739 CAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1854680 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 | || ||||||| | | | |||||| | | || | |||||| | ||||| || |||| Sbjct 1854679 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1854620 Query 5074 CTTCCGCTTTTTTGTACAT 5092 |||| ||||| |||||||| Sbjct 1854619 CTTCAGCTTTCTTGTACAT 1854601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049527134662