Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 192 8e-44 >seq3 Length=2984533 Score = 192 bits (212), Expect = 8e-44 Identities = 387/571 (68%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1852811 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1852870 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| || ||||| || |||| || |||||||| Sbjct 1852871 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1852930 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 || ||||| || |||||||| || || || || | ||| | | | | | || Sbjct 1852931 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGAT-CG 1852989 Query 48312 TTGTGTA----TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 ||| | |||||| | ||||| || | ||||| ||| || || || || || || Sbjct 1852990 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1853049 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTATTA 48423 || | ||| ||||| |||| | |||| || || ||| ||||| || | Sbjct 1853050 GATCGAATTGAAGAGGAAGTCA----CGCTGCTGAGAGTCAGAAATGTAGGTATCGATGA 1853105 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||| || |||| |||||||| ||||| || ||||||||||| |||||||| | Sbjct 1853106 GGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGC 1853165 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 |||| | | ||||| || | |||| || || ||| |||||| || || || | Sbjct 1853166 GGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATAC 1853225 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 | || ||| ||||||||||| | |||| | || |||| |||||| | ||| Sbjct 1853226 CGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCA 1853285 Query 48604 G---TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | ||||||||||| ||||||||| || ||||| | ||||| | |||||||| | Sbjct 1853286 GGTTATTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACG 1853345 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | |||| ||||| || ||||| | ||| || Sbjct 1853346 AAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Score = 165 bits (182), Expect = 1e-35 Identities = 386/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || ||||| || ||||| || ||||| || || | ||| || |||| |||||||| || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306 || ||||| ||||| || || || || || ||| ||| || ||| | || || | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1854981 Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 1854980 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1854921 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421 || | ||||| ||| ||| | | | ||||| || || | ||||||||| || Sbjct 1854920 TCAACAGCATCAAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1854865 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||| || | ||| ||| |||||||| || || || || ||||| || || Sbjct 1854864 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1854805 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||| || | ||| ||||| | | || || ||| | | ||||| || || || Sbjct 1854804 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1854745 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595 |||||| ||||||||||| || | ||||| | ||| | || ||||| Sbjct 1854744 ACCATCAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1854685 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | ||| ||||||||| | || ||||||||| | || | |||||| || ||||| Sbjct 1854684 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCA 1854628 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || || || ||||| || ||||| | ||| || Sbjct 1854627 GAAAGACGCTTCAGCTTTCTTGTACATTTGCCAGAT 1854592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960