Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 187 4e-42 >seq3 Length=2984533 Score = 187 bits (206), Expect = 4e-42 Identities = 384/567 (68%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1852811 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1852870 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | |||||||| || || || || || ||||| || || | || |||||||| Sbjct 1852871 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1852930 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || ||||| || |||||||| || ||||| || || | ||| | | | | ||| Sbjct 1852931 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCG-ATCG 1852989 Query 46801 TT-ATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 || || | |||||||| | ||||| || | ||| | ||| || || || || || || Sbjct 1852990 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1853049 Query 46857 TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 || | ||| ||||| |||| | | | || || || ||||| || | || Sbjct 1853050 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1853109 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 | || |||| || ||||||||||| || ||||||||||| |||||||| | | Sbjct 1853110 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGAAATCCATAAAAACAGCGGAC 1853169 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 ||||| ||||| || | |||| || || || |||||| || || || || || Sbjct 1853170 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1853229 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG--- 47093 ||| ||||||||||||| |||| | || |||| ||| | | |||| Sbjct 1853230 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1853289 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||||||||||| ||||||||| || ||||| | ||||| | ||||| || || || Sbjct 1853290 ATTATTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1853349 Query 47154 CTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| || ||||| | ||| || Sbjct 1853350 CTGGGCTTTCTTGTACATCTGCCAAAT 1853376 Score = 156 bits (172), Expect = 6e-33 Identities = 378/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1855157 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1855098 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || ||||| |||||||| || |||||||| || | ||| || || | |||||||| || Sbjct 1855097 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1855038 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || ||||| ||||| || ||||| ||||| ||||| | || ||| | | ||| | Sbjct 1855037 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1854978 Query 46801 TTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || || ||||| | | | ||||| || ||||| | || ||||| || || || || Sbjct 1854977 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1854918 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 | ||||| ||| || | | || | | || || | || ||||| || | ||| Sbjct 1854917 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1854858 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || | || || || ||||| || || || || ||||| || || | || Sbjct 1854857 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1854798 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATC 47036 |||| ||| ||||| | | || || ||| |||| ||||| || || || ||||| Sbjct 1854797 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCA-ACAAGGTTCTCGTTGACGATACCATC 1854739 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA---TCGGTAGTCAG 47093 | ||||||||||| || | ||||| | ||| | ||| ||| || | Sbjct 1854738 AGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCG 1854679 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||||||||||| | || ||||||||| | || | |||||| || |||||||| ||||| Sbjct 1854678 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1854619 Query 47154 CTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| || ||||| | ||| || Sbjct 1854618 TTCAGCTTTCTTGTACATTTGCCAGAT 1854592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934275236480