Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 178 3e-39 seq6 168 1e-36 seq3 91.5 3e-13 >seq1 Length=3168126 Score = 178 bits (196), Expect = 3e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| ||||| |||| ||||||||| |||||||| || ||||| || || ||| Sbjct 2212483 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2212424 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| || |||||||||||||| || ||||| || || || | Sbjct 2212423 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2212364 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 |||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 2212363 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2212304 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2212303 AAGATCTGCAT 2212293 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | || || || |||||||| | || || || || ||| Sbjct 2212763 TCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2212704 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| ||||| ||||| ||||| || |||||||| || ||||| || || ||| | Sbjct 2212703 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2212644 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 2212643 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2212584 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2212583 AAAATCTGCAT 2212573 Score = 159 bits (176), Expect = 7e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 282892 CCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA 282951 ||||||| | ||||| ||||| || |||||||| || | ||| ||||| || ||||| | Sbjct 2213293 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2213234 Query 282952 GTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011 ||| || || ||||| |||| ||||| ||||| ||| || || ||||||||||| | Sbjct 2213233 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2213174 Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 |||| || || || ||||||| |||||||||| || || || | ||||||||||| | Sbjct 2213173 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGC 2213114 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| ||||| |||||||| Sbjct 2213113 CTGTGAGGGTCTTGACGAAGATCTGCAT 2213086 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || ||||||||||| || || || || ||||| Sbjct 2213048 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2212989 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || ||||| || || || |||||||| || |||||||| ||||| || || Sbjct 2212988 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTA 2212929 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| || | ||||| ||||| || |||| || || || Sbjct 2212928 TCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACA 2212869 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2212868 AAGATCTGCAT 2212858 Score = 100 bits (110), Expect = 6e-16 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| ||||||| |||||||| ||||| || | ||||| ||||| |||| || || Sbjct 608054 TACCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAAGACTCCACC 608113 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| ||||||||||| Sbjct 608114 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATTTT 608163 >seq6 Length=2225400 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | ||| ||||| |||||||| ||||| || ||||| || Sbjct 324696 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAA 324637 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| ||| |||||||||||||| || |||||||| || ||| | Sbjct 324636 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 324577 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||||||||| || |||| ||||| ||| Sbjct 324576 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACG 324517 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 324516 AAGATCTGCAT 324506 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||| ||||||| ||| |||||||| || || || || || || || ||| Sbjct 324186 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 324127 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||||| || || ||||||||||| |||||||| || || ||| || Sbjct 324126 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 324067 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 324066 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 324007 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 324006 AAGATCTGCAT 323996 Score = 159 bits (176), Expect = 7e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||| ||||| | ||| |||||||| ||||| || || || || || || Sbjct 323899 TCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAA 323840 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || ||||| || || ||||||||||| || ||||| || || ||| || Sbjct 323839 ATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTA 323780 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||||| || || ||||| ||||||||||| || || | ||||| ||| Sbjct 323779 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACG 323720 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 323719 AAGATCTGCAT 323709 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || ||||| |||||||||| || ||||| || ||||| || || || || Sbjct 324978 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 324919 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 ||||| || | || || ||||| ||||| || |||||||| || ||||| || || Sbjct 324918 GCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 324859 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| |||||||||| ||||| ||||| ||||| ||||||||||| | ||| Sbjct 324858 ACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTC 324799 Query 283083 TTAACGAATATCTGCATT 283100 || || || ||||||||| Sbjct 324798 TTGACAAAGATCTGCATT 324781 >seq3 Length=2984533 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || ||||||||||| | |||||| | || || ||||| || || || |||||| | Sbjct 1855314 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTG 1855373 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || | || || || ||| || || ||| | | |||||||||| |||||||| Sbjct 1855374 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1855433 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 | || || | |||||||| || |||||||| || ||||| || ||||| || ||| Sbjct 1855434 ATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTATCGGATTACTCGAAG 1855493 Query 230402 GCCCGGTGT 230410 | ||||||| Sbjct 1855494 G-CCGGTGT 1855501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739012241156