Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001457935.1_202015- 11-03] 14 sequences; 26,374,808 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 172 5e-38 seq1 134 1e-26 seq8 91.5 1e-13 >seq6 Length=2225400 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || ||||||| ||| ||||||||| |||||||||||||| Sbjct 324505 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCGGA 324446 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| |||||||||||||| ||||| |||| |||||| ||||||| ||| Sbjct 324445 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 324386 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| | | ||| | || || | ||| | | ||||| ||||| | Sbjct 324385 AATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 324327 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 324326 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 324278 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||| ||| || || ||||||||||||||||||||| || |||||||| |||| |||| Sbjct 324203 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 324144 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||||| ||||| |||| |||||| ||||| | ||| | || |||||||||| || Sbjct 324143 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGG 324085 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || | ||| | | ||||| ||||||||||| | ||| ||||| || Sbjct 324084 ATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 324025 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| |||||| ||||| ||||||||| Sbjct 324024 CCAGTCAACGTCTTCACGAAGATCTGCATG 323995 Score = 141 bits (156), Expect = 9e-29 Identities = 162/214 (76%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| || || ||||||||| ||||||||||| || |||||||| |||| | Sbjct 323919 CACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 323860 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| |||| ||||| ||||| | ||| | | |||||||||| Sbjct 323859 CGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCC- 323801 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | ||||| ||||||||||| | || ||||| Sbjct 323800 TGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 323741 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 || || || || ||||| ||||| |||||||||| Sbjct 323740 TTCCCAGTGAGGGTCTTCACGAAGATCTGCATGT 323707 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || || ||||||||| || || ||||| || || ||||| | || ||||| Sbjct 324711 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 324652 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||||||||| || |||||||| ||||| | || | | |||||||||| ||| | Sbjct 324651 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAAT 324593 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||||| | ||| | | | ||||| |||||| ||||| | ||| ||||| || || Sbjct 324592 CTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCC 324533 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| ||||| ||||||||| Sbjct 324532 GGTCAGGGTCTTGACGAAGATCTGCATG 324505 Score = 132 bits (146), Expect = 4e-26 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || |||||||||||||| || || ||||| || |||||||| |||| | Sbjct 324992 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 324933 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| || || || |||||||| ||||| | |||| | ||||||||| Sbjct 324932 CGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 324874 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | || | | | ||||| ||||| ||||| | ||| || || Sbjct 324873 TGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTC 324814 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || ||||| || || |||||||| Sbjct 324813 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 324782 >seq1 Length=3168126 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 2213084 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2213025 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| || || || ||||||||||| |||| || Sbjct 2213024 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2212965 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || |||| || | | |||||| |||||| || Sbjct 2212964 ATGCCCTCCTTATCC-TGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2212906 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| || || || || |||||||| Sbjct 2212905 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2212858 Score = 125 bits (138), Expect = 7e-24 Identities = 158/211 (75%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||||||| || |||||||| ||||||||||| || || || || ||||| |||| || | Sbjct 2213293 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2213234 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||| || || |||||||| || ||||||| || | || ||||||| | ||| Sbjct 2213233 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGT-CTTGA 2213175 Query 41775 TTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | || | ||||| | | || | ||||| ||||| ||||||| ||| ||||| | Sbjct 2213174 ATCTTCGCCTTCACATTATCG--ATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCT 2213117 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| |||||||| Sbjct 2213116 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2213086 Score = 116 bits (128), Expect = 3e-21 Identities = 156/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | ||||| || ||| ||||| ||||| || |||||||| || ||| | || | Sbjct 2212783 CACCAAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGAGTTCGCCCATCCT 2212724 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | | |||||| || ||||| |||| || || ||||| | |||| | ||||||||| Sbjct 2212723 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 2212665 Query 41772 TGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | || |||||| ||||| ||||| | || ||||| Sbjct 2212664 TGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2212605 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||| ||||||||||||||||||||| Sbjct 2212604 TTCCCTGTCAAGGTCTTTACGAAAATCTGCATG 2212572 >seq8 Length=1768214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||| || || |||||||| ||| | Sbjct 404541 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTAGACTCTTTTTGGATGTTATAATCGCTG 404600 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| |||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 404601 AGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGGTC 404653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303919096800