Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=3023347 Score = 161 bits (178), Expect = 1e-34 Identities = 391/582 (67%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 |||||| | |||| ||||| || ||||| || | || ||||| | || || || Sbjct 1886492 AAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAG 1886551 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 |||||||||||| || || || ||||| ||||||||||| | ||| || || | || Sbjct 1886552 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1886611 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA--TCGTTCGGCG 17122 || || || || ||||| || || || || | ||| ||||| | || |||| ||| Sbjct 1886612 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGT--GGCA 1886669 Query 17123 TACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 |||||| || ||| | || ||||| | | ||||||||| || ||||| | ||| Sbjct 1886670 AACGTCGA-TCGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCA 1886728 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || || || || | || || | || | ||| ||| || || || Sbjct 1886729 TGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGT 1886788 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 ||||||||| || ||| |||| ||||| ||||| ||||| ||||| ||||| || Sbjct 1886789 ATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATA 1886848 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||| || ||| |||| || ||| ||||| | || | || || ||| | ||||| |||| Sbjct 1886849 AAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCGT 1886907 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTTC 17418 | || || |||||| ||||| ||||| |||| | ||||| | ||||||| ||| Sbjct 1886908 TGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTC 1886965 Query 17419 GTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGG 17475 || | || | | |||||| | ||||||||| ||||| | ||||||| Sbjct 1886966 GTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGA 1887025 Query 17476 GGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||||||| |||| || || || ||||| | |||||| Sbjct 1887026 CGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545509429520