Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 >seq3 Length=3023347 Score = 131 bits (144), Expect = 2e-25 Identities = 360/542 (66%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 |||||||| | || || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1886532 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1886591 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||| || | |||||| || || || ||||| || || || || | ||| || Sbjct 1886592 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1886651 Query 16343 GCGATTAA--TCGTTCCGCGTACGTAGCATC-TTTATTACGAATCCATTTCTGTACCCAT 16399 || | || |||| || |||| | ||| || || | ||||| | | |||| Sbjct 1886652 GCCACCAACCTCGT--GGCAAACGTCG-ATCGTTGATCAGAGATCCACCTGAGGGCCCAC 1886708 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459 |||| || || || | || || || || || | || || | || | | Sbjct 1886709 TCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGC 1886768 Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519 ||| || || || ||||| || || | | ||| |||| ||||| ||||| || Sbjct 1886769 TGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCC 1886828 Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAA 16578 || ||||| |||||||| || || || | || || ||||||||| | || |||| Sbjct 1886829 ATCATGATCTGGAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAA 1886887 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATG 16636 || ||| |||| ||||| || || |||||||| || |||||||| |||| | || Sbjct 1886888 CCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATA 1886947 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTG 16693 || | ||||||| ||||| | | || | | | ||| || | ||||||| Sbjct 1886948 TGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTG 1887005 Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAA 16753 || ||||| | ||||| | ||||||||| |||| || || || ||||| | |||| Sbjct 1887006 GACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAA 1887065 Query 16754 AT 16755 || Sbjct 1887066 AT 1887067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414310502480