Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 156 5e-33 >seq3 Length=3023347 Score = 156 bits (172), Expect = 5e-33 Identities = 376/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| ||| |||||||| ||| || | |||||||| | ||| || | ||| ||||| Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--- 24302 || |||||||| || || || || || ||||| | | || || || | || | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1888669 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | || ||||| | | ||||| || |||||| |||| ||||| || || ||||| Sbjct 1888668 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1888609 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | ||||| ||| || || | || ||| || || | || ||||| || | ||| Sbjct 1888608 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1888549 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || | || || || ||||| || ||||| || |||||||| || | ||| Sbjct 1888548 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1888489 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1888488 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1888429 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 24598 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1888428 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1888370 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 |||||||| || | || |||||| || | |||| |||||| | ||||| || || || Sbjct 1888369 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1888310 Query 24659 CTCTGCCTTTTTATACATATTCCAGAT 24685 || || || || ||||| | |||||| Sbjct 1888309 TTCAGCTTTCTTGTACATTTGCCAGAT 1888283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721496098720