Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 239 5e-58 seq6 147 2e-30 seq1 111 2e-19 >seq3 Length=3023347 Score = 239 bits (264), Expect = 5e-58 Identities = 400/572 (70%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || ||||| |||||||||| ||| || |||||||| Sbjct 1888283 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1888342 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || || || | | | ||||||| | ||| | |||||||| ||||| || || || Sbjct 1888343 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1888401 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| || || || ||||| || ||| || || |||||||||||||| || || ||||| Sbjct 1888402 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1888461 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | | ||||| |||| ||| |||||||| ||||||||||| || || || || Sbjct 1888462 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1888521 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||| || | ||| || | || || || ||||| || ||| | | | || Sbjct 1888522 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1888581 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | || || || ||| | || | ||||| || || || |||||| |||||| Sbjct 1888582 GCAACGCGAGTACC--TTTTTG-ATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1888638 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||||||| ||| | || | || | ||||| | || || Sbjct 1888639 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1888698 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || || |||||| | ||||| || || ||||||| | || || ||| | || Sbjct 1888699 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1888758 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| ||| || |||||| | |||||||| Sbjct 1888759 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1888818 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| |||||| || || ||| |||||| Sbjct 1888819 AATGCATACCGACTTCGCATGCTTGTTGTTCA 1888850 Score = 192 bits (212), Expect = 6e-44 Identities = 391/574 (68%), Gaps = 15/574 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 116696 TCCAAGGACACGAGCGACTGGGAGCG---CTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||||||| | | |||| || ||||| ||||||||||| Sbjct 1887007 TCCAAAGATATCTTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCATATCA 1886948 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 | || ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| Sbjct 1886947 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1886888 Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||||| | || || || | || || | || || || || || || |||||| | Sbjct 1886887 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATGA 1886830 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 |||| ||| | |||||||||| || || ||||||||| || ||| | |||| Sbjct 1886829 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTC 1886770 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | ||| | || || | |||||||| || || |||||||| ||||| Sbjct 1886769 AGCAGCGTGACTTCC---TCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1886713 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCG-GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 |||||||||| || | |||||| | | || || | | || | | | | ||||| Sbjct 1886712 CCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGA-TCGACGTTTGCCACGAGGTTGGTG 1886654 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || ||||| || || || || ||||||| || || ||| || | || || ||||| Sbjct 1886653 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1886594 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 |||||||| || |||||||| || | || || ||||| || || ||||||| Sbjct 1886593 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1886534 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || |||| || ||||||||| | |||||| Sbjct 1886533 GGGATGCACACAGATTTTGCCTGTCTCTTGTTCA 1886500 >seq6 Length=2299419 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| || || || |||| ||||| | | Sbjct 331484 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 331543 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| ||||||| Sbjct 331544 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 331602 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| ||| |||||| || Sbjct 331603 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAA 331662 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| ||||||| || Sbjct 331663 CATCCAGAAGGAGTCCACCTTGCATCTCGT 331692 Score = 136 bits (150), Expect = 4e-27 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || ||||| || || || |||||| |||| || || | | Sbjct 330915 ATGCAGATCTTCGTAAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 330974 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || || |||||| | ||||| Sbjct 330975 GACACCATCGATAACG-TCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCA 331033 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 331034 GCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 331093 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||||||||| | || || ||||| | |||| |||||| Sbjct 331094 CATCCAGAAGGAGTCGACTCTTCATCT--CGGTGCGTTTGAGG 331134 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || ||||| |||| || || | | Sbjct 331202 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 331261 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 331262 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 331320 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 331321 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 331380 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 331381 CATTCAGAAGGAGTCGACCCTCCAT 331405 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 331712 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 331771 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 331772 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 331830 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| || || || || | ||||| || |||||||| Sbjct 331831 GCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 331890 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 331891 TATCCAGAAGGAGTCGACTCTTCATCT 331917 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || |||||||| || || ||||| |||| ||||| | | Sbjct 331987 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 332046 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || |||| ||||| || || || || | ||||| Sbjct 332047 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 332106 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | |||||||| ||||| || || | |||||||| |||||||| Sbjct 332107 GCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAA 332166 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| || || || Sbjct 332167 TATCCAGAAGGAGAGCACCCTTCACCT 332193 >seq1 Length=3205512 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || || || | | Sbjct 2257408 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2257467 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 2257468 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2257527 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || |||||||| || || | |||||| || || ||||| Sbjct 2257528 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2257587 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 2257588 ATCCAGAAGGAGTCTACCCTTCATCT 2257613 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || ||||| | || Sbjct 2257973 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2258032 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | || || ||||||||||| |||| || Sbjct 2258033 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2258092 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2258093 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2258152 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 2258153 ATCCAGAAGGAGTCGACTCTTCACCTTGT 2258181 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 2258201 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2258260 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| || |||||||| |||||||| Sbjct 2258261 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2258320 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | |||||||| || |||| |||| ||||| || || |||||| Sbjct 2258321 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2258380 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| ||| || ||||| Sbjct 2258381 ATTCAGAAAGAGAGCACCCTCCATCT 2258406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || || || || ||||| |||| ||||| | | Sbjct 2257688 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2257747 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 2257748 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2257806 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| ||||| Sbjct 2257807 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2257866 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| ||||| ||| | || ||||| || Sbjct 2257867 CATTCAGAAAGAGTCTACTCTGCACCT 2257893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640