Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 125 5e-24 seq6 111 1e-19 >seq1 Length=3205512 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || ||||| |||||||||||||| Sbjct 2258199 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2258140 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || ||||| || ||||| || || || Sbjct 2258139 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2258080 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||||| | || | || | |||| ||| ||||| Sbjct 2258079 ATGCCCTCCTTATCCTGGATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2258021 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || |||||||||||||||||||| Sbjct 2258020 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2257973 Score = 109 bits (120), Expect = 4e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34182 CCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCA 34241 |||| || | || || |||||||| |||||||| || || || || |||| |||| Sbjct 2258408 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2258349 Query 34242 ACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCT 34300 | |||||||| || ||||| || || |||||||| | |||| | || |||||||| Sbjct 2258348 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCTTGA 2258290 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 ||||| ||| | || | |||| || | || || || |||| |||||| || ||| Sbjct 2258289 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTG 2258230 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || ||||||||||| Sbjct 2258229 CCTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 >seq6 Length=2299419 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 34180 CACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 ||||| |||| | || || || ||||| || |||||||| ||||| || | || | Sbjct 332198 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCT 332139 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | ||||||||| || |||||||| |||||||||||| || | | |||||||| Sbjct 332138 CGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 332079 Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358 ||||| ||| | || | | |||| || | || ||||| || | |||||| || | Sbjct 332078 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCT 332019 Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || ||||| || || |||||||||||||| Sbjct 332018 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 331988 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| || || || | || || | |||||||| |||||| Sbjct 331902 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAA 331843 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| | |||| | | ||||||||| |||||| ||| | | Sbjct 331842 ATGAGGCGCTGCTGGTCAGGCGGG-ATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 331784 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | ||| ||||| || | |||||| || |||||||| || || || || Sbjct 331783 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGAC 331724 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 331723 GAAGATCTGCAT 331712 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||| || || ||| |||| || | ||||||||| ||||| Sbjct 331392 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 331333 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| ||| | || ||||||||| ||||| ||| | | Sbjct 331332 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 331273 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || || || || | |||||| || || || || | || ||||| Sbjct 331272 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 331213 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 331212 AAGATCTGCAT 331202 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| |||||||| || ||| |||| || | ||||||||| ||||| Sbjct 331674 TCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 331615 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| ||| | || |||||| || ||||| ||| | | Sbjct 331614 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 331555 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| || | ||| || || ||||| ||||| || || || Sbjct 331554 TCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACG 331495 Query 34379 AAGATCTGCAT 34389 || || ||||| Sbjct 331494 AAAATTTGCAT 331484 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 34167 CGCGCAGCCTCA---GCACC-AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||| | ||||| ||||| || || | ||| || ||||| ||||| ||||| || Sbjct 331141 CGCGAAACCTCAAACGCACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAA 331082 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| |||||||| | |||||||||||| ||| Sbjct 331081 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGG 331022 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | || | || || || Sbjct 331021 ATTCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACC 330962 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| || || || ||||||||||| Sbjct 330961 TCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTTACGAAGATCTGCAT 330915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071944875840