Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 105 5e-18 seq1 102 6e-17 >seq6 Length=2299419 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || |||||||||||||| || |||||||| ||| |||| | || || Sbjct 332197 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTC 332138 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || || | ||||| ||||||||||| | || ||||||||| Sbjct 332137 GAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 332078 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||| | || || ||||| Sbjct 332077 AATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTT 332018 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| |||||||| ||||| Sbjct 332017 ACCCGTGAGGGTCTTGACAAAGATCTGCAT 331988 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||| ||||| |||||| || ||| |||| || || || Sbjct 331686 TGCAAGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGC 331627 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||| ||||| ||||| || || | |||||||| || ||| || Sbjct 331626 TTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTC 331567 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| | ||| ||||| | ||||||||||||||||| Sbjct 331566 GCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTG 331507 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 331506 AGGGTCTTGACGAAAATTTGCAT 331484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| || ||| | || || ||||| || |||||||| Sbjct 331903 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAA 331844 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | ||||||||||||| ||| ||| ||| || Sbjct 331843 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 331784 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||||| | || ||||||||||| ||||| ||||| || Sbjct 331783 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGAC 331724 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 331723 GAAGATCTGCATG 331711 >seq1 Length=3205512 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 |||| || || || |||||||| |||||||||||||| || ||| |||| |||| | Sbjct 2258411 TACCCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCT 2258352 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| ||| || || || || |||| || || ||||| || || | || |||||||| Sbjct 2258351 CCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTT 2258292 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | ||||| | ||| ||||||| || ||||||| Sbjct 2258291 GAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCT 2258232 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || ||||| ||||| Sbjct 2258231 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || || ||||||||| || ||||| || || ||| | || | Sbjct 2257618 TACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCT 2257559 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || ||||| || ||||| || | ||||| ||||||||||| | ||||||||||||| Sbjct 2257558 CAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCT 2257499 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | ||||| | |||||| || | || || |||| Sbjct 2257498 GAATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCT 2257439 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| ||||| || ||||| |||||| Sbjct 2257438 TGCCCGTCAATGTCTTGACGAAGATCTGCATG 2257407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| ||||| || ||| |||||||||||||| ||| || || | || || Sbjct 2257897 ACCAAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTC 2257838 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| ||||| |||||||| || ||||||||||| | || ||||||||| Sbjct 2257837 CAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 2257778 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||| | || |||||||| Sbjct 2257777 AATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTT 2257718 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || || || |||||| Sbjct 2257717 CCCTGTCAAGGTCTTTACGAAAATCTGCATG 2257687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075132590294