Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 141 8e-29 seq6 118 9e-22 seq1 116 3e-21 >seq3 Length=3023347 Score = 141 bits (156), Expect = 8e-29 Identities = 376/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || | || ||||||||||| |||||| | || || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 57630 TCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| | | ||| || || || | |||| || | Sbjct 1887007 TCCAAAGATATCTTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCATATCA 1886948 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || |||| ||||| ||||| ||||| |||||||| ||||||||| |||| || | Sbjct 1886947 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1886888 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| ||||| |||| | || | | || ||||| ||||| || | || Sbjct 1886887 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATGATG 1886828 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC----GTGAAGGACAA 57862 |||||| | || || |||| || || || ||||||||||| ||| ||| || Sbjct 1886827 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTCAG 1886768 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 | || | || | || ||||| ||||||| || || || ||| || ||||| Sbjct 1886767 CAGCGTG--ACTT--CCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGA 1886713 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG-GCCACGTTCGCCGAGAGGCTAATC 57980 | |||||| | ||| ||||| | | ||| | ||||| ||| |||| | | Sbjct 1886712 CCGAGTGGGCCCTCAGGTGGAT-CTCTGATCAACGATCGACGTTTGCCACGAGGTTGGTG 1886654 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 |||||||| || || ||||| || ||||| || || ||||| |||| || ||| || Sbjct 1886653 GCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1886594 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| || || ||||| || | || ||| ||||| |||| || ||||| Sbjct 1886593 AAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAA 1886534 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || |||||||| || || Sbjct 1886533 GGGATGCACACAGATTTTGCCTGTCT 1886508 >seq6 Length=2299419 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || ||||||||||| || || || || ||||||||| |||| || || | | Sbjct 330913 ACATGCAGATCTTCGTAAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTT 330972 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| |||| | ||||| || || |||||||||||| | || ||||||| Sbjct 330973 CGGACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACC 331032 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || ||||| ||||| ||| | || ||| || | || |||| Sbjct 331033 AGCAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 331092 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || || |||||||||||||| Sbjct 331093 ACATCCAGAAGGAGTCGACTCTTCATCT 331120 Score = 104 bits (114), Expect = 2e-17 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 331711 CATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 331770 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| || | ||||| |||| Sbjct 331771 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 331829 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||| ||||| || | || || | | | ||| | || || Sbjct 331830 AGCAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 331888 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || || |||||||||||||| ||||| Sbjct 331889 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 331923 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || |||||||| |||| || || | || Sbjct 331201 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 331260 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 331261 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 331320 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | |||||| || | || ||||| Sbjct 331321 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAA 331380 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 |||||| || || ||||| || ||| ||| Sbjct 331381 CATTCAGAAGGAGTCGACCCTCCATTTGG 331409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| ||||| || |||| || || | || Sbjct 331484 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 331543 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || || ||||| ||| | || || |||||| Sbjct 331544 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 331603 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || ||| ||| | ||| |||||| Sbjct 331604 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 331663 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || | ||||| || ||| Sbjct 331664 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTT 331696 >seq1 Length=3205512 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||||||||| ||||||| || |||||||| |||| || || | || Sbjct 2257687 CATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2257746 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || || |||||||||||| | || |||||||| Sbjct 2257747 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2257806 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| || |||||||| || ||| | |||||| || Sbjct 2257807 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2257866 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 |||||| ||||| || ||||| || || Sbjct 2257867 CATTCAGAAAGAGTCTACTCTGCACCT 2257893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | || || || | || Sbjct 2257407 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2257466 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || || ||||||||| || | || |||||||| Sbjct 2257467 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2257526 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||| | || || Sbjct 2257527 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2257562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| |||||||| | || || || | || Sbjct 2258201 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCG 2258260 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | ||||| |||||| Sbjct 2258261 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2258320 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| || ||||| ||| | || | ||||| ||| Sbjct 2258321 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2258380 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| ||||| || || ||||||| Sbjct 2258381 ATTCAGAAAGAGAGCACCCTCCATCTGG 2258408 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || || || ||||| Sbjct 2257973 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2258032 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| || || ||| ||||| ||| | || || || || Sbjct 2258033 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2258092 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || || ||| | ||| || ||| Sbjct 2258093 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2258152 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||||||||| || || || | || | ||||||| Sbjct 2258153 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGGTA 2258201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880