Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 165 1e-35 >seq3 Length=3023347 Score = 165 bits (182), Expect = 1e-35 Identities = 378/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| |||||||| ||| |||| |||||||| | ||| || | ||| || || Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || |||||||| ||||| ||||||||||| || | ||| || || || ||||| || ||| Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33749 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1888669 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1888668 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1888609 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | |||| ||| || || | || ||| || || | ||||||||||| | ||| Sbjct 1888608 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1888549 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1888548 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1888489 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | ||| || || | | || || || | | || || || || || |||||| Sbjct 1888488 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1888429 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 34045 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1888428 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1888370 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 |||||||| || | || |||||| || | |||| |||||| | ||||| || || || Sbjct 1888369 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1888310 Query 34106 CTCTGCCTTTTTATACATATTCCAGAT 34132 || || || || ||||| | |||||| Sbjct 1888309 TTCAGCTTTCTTGTACATTTGCCAGAT 1888283 Score = 159 bits (176), Expect = 4e-34 Identities = 379/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| || ||||| ||||| || ||||| | |||||| | |||||||||| Sbjct 1886502 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1886561 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | || ||||| || || || || || ||||| || || ||||| || |||||| Sbjct 1886562 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1886621 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CG-GCG 33749 || |||||||| |||||||| || || || || | | ||| || ||| || || Sbjct 1886622 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA-AACGTCGATCG 1886680 Query 33750 CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1886681 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1886740 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || | ||| ||||| ||| | | | || || || |||||||| | || Sbjct 1886741 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1886800 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 | || ||||||| ||||||||||| || ||||| ||||| || ||||| | | Sbjct 1886801 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGAC 1886860 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | || ||||| | |||| || || | | ||| || || || || || || Sbjct 1886861 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1886920 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 || |||||||| |||| |||| | ||| |||| ||||| | || || Sbjct 1886921 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1886980 Query 34049 A---TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 | ||||| || ||||||||| || ||||| | ||||| |||||||| || || Sbjct 1886981 ATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1887040 Query 34106 CTCTGCCTTTTTATACATATTCCAGAT 34132 || || || || ||||| | ||| || Sbjct 1887041 CTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817489781920