Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 >seq3 Length=3023347 Score = 158 bits (174), Expect = 2e-33 Identities = 381/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| || ||||| ||||| || || || | |||||| | |||||| ||| Sbjct 1886502 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1886561 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 1886562 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1886621 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGG-CA 42232 || |||||||| |||||||| || || || || | | ||| || ||| || | Sbjct 1886622 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA-AACGTCGATCG 1886680 Query 42233 CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1886681 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1886740 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || | ||| ||||| ||| | | | || || || |||||||| | || Sbjct 1886741 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1886800 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | || |||| || ||||||||||| || ||||| ||||| || ||||| | | | Sbjct 1886801 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGAC 1886860 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | | |||||||| | |||| || || | | ||| ||||| || || ||||| Sbjct 1886861 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1886920 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGT---GTT 42526 || |||||||| |||| |||| | ||| |||| ||||| | | ||| Sbjct 1886921 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1886980 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | || ||||| || ||||||||| || ||||| | ||||| ||||||||| || Sbjct 1886981 A--TTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1887038 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGAT 42615 || | || || || ||||| | ||| || Sbjct 1887039 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Score = 156 bits (172), Expect = 6e-33 Identities = 376/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| |||||||| ||| |||| ||||| || | ||| || | ||| ||||| Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1888669 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1888668 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1888609 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | |||| ||| || || | || ||| || || | || |||||||| | ||| Sbjct 1888608 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1888549 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1888548 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1888489 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | |||| || || | | || || ||| | | || ||||| || || || ||| Sbjct 1888488 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1888429 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---- 42528 ||| ||||||||||| | ||||| | ||| | || | | ||||| Sbjct 1888428 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1888370 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 |||||||| || | || |||||| || | || | |||||| | ||||| || || || Sbjct 1888369 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1888310 Query 42589 TTCTGCCTTTTTATACATATTCCAGAT 42615 ||| || || || ||||| | |||||| Sbjct 1888309 TTCAGCTTTCTTGTACATTTGCCAGAT 1888283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139082550640