Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq3 129 1e-24 seq1 113 1e-19 >seq6 Length=2299419 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | ||| || || || || || || |||||| Sbjct 332178 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCCGCAAAA 332119 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 332118 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 332059 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 332058 TCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 331999 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 331998 AAGATCTGCATT 331987 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 331120 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 331061 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| | | ||| || || || || |||||||| || ||||||||| Sbjct 331060 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 331001 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || || || ||||| || || || ||||| ||| Sbjct 331000 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 330941 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || |||||||| Sbjct 330940 GTGAGGGTCTTTACGAAGATCTGCAT 330915 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 331917 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 331858 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 331857 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 331798 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| || Sbjct 331797 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 331738 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 331737 GTCAGGGTCTTGACGAAGATCTGCAT 331712 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | |||||||| || || || || Sbjct 331398 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCC 331339 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 331338 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 331279 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 331278 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 331219 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 331218 TTCACGAAGATCTGCAT 331202 >seq3 Length=3023347 Score = 129 bits (142), Expect = 1e-24 Identities = 364/546 (67%), Gaps = 26/546 (5%) Strand=Plus/Minus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| ||||||||| | ||| ||||| |||||||| ||||| | ||| || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAG---AAAGAAG---ATTT-AT 268845 || | || | | || ||||| ||| |||| ||| || ||| |||| || Sbjct 1887007 TCCAAAGATATCTTCGACTGGAACAAT----AACCTGAATGATAACGAACGCCATTTCAT 1886952 Query 268846 ATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA 268905 ||| ||| | || || |||||||| | | || ||||| || ||||| ||||| || || Sbjct 1886951 ATCATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1886892 Query 268906 GAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGC 268965 | ||| | || ||||| |||||| | | |||||||| ||||||||||| Sbjct 1886891 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCAT 1886832 Query 268966 TATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGA-TA 269024 || ||||| ||||| || || | ||| ||| | || ||||| || || ||| | Sbjct 1886831 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTC 1886772 Query 269025 ACAACGAAAAGAAAAGACT--ATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaa 269079 || | || |||| | ||| ||| || ||| ||||| || || | | Sbjct 1886771 TCAGC----AG-CGTGACTTCCTCTTCAATTCGATCGAG-ACTATACCATGCGTCAAGCA 1886718 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-AGCG--CGCCTTACGGAGAAAGGTT 269136 || | || ||||| || | ||||| ||| | || || | | | ||||| Sbjct 1886717 GAAGACCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGATCGACGTTTGCCACGAGGTT 1886658 Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196 || || || || || |||||||| || ||||| || || |||||||| | ||||| || Sbjct 1886657 GGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1886598 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 | |||||||| |||| || ||||| || ||||| || ||||||||| |||| || |||| Sbjct 1886597 GCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGA 1886538 Query 269257 CGAAGG 269262 |||||| Sbjct 1886537 CGAAGG 1886532 Score = 118 bits (130), Expect = 2e-21 Identities = 299/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || ||||||||||| | |||||||||||| ||||| || || || ||| |||| Sbjct 1888409 CTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1888468 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | ||||| ||| |||| || | || || ||||| ||||| || || |||||| Sbjct 1888469 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1888528 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGA---TAA-CAACGA 269031 || || |||| ||| || | || |||||||| || | || ||| ||||| Sbjct 1888529 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1888588 Query 269032 AAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 | | || ||| | || | |||| | || |||||| | || || | || | Sbjct 1888589 GAGTAC----CTTTTTGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACT 1888643 Query 269091 GGGCTCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTT 269145 |||| || ||||| |||| | ||| || || | ||| | ||||| || || Sbjct 1888644 GGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTT 1888701 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 |||||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| Sbjct 1888702 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1888761 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 | ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | Sbjct 1888762 GCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAAT 1888821 Query 269266 ACACTGCGACTTCGCTTGTTTATTATT 269292 || ||||||||| || || || || Sbjct 1888822 GCATACCGACTTCGCATGCTTGTTGTT 1888848 >seq1 Length=3205512 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || || || || ||||||| || || || | || |||||| Sbjct 2257884 GTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2257825 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || || || ||||| || ||||| || ||||||||||| || || Sbjct 2257824 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2257765 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| || || || ||||| || || | || Sbjct 2257764 ACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTC 2257705 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 2257704 TTTACGAAAATCTGCAT 2257688 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| || ||||| ||||| || ||||| || || | || || || || Sbjct 2257613 AGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGC 2257554 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 ||||| ||||| || || || | ||| || || ||||| || || || || ||||||||| Sbjct 2257553 TGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATC 2257494 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || ||||| || | || || || || || || || || || ||||| || Sbjct 2257493 TTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCC 2257434 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||| || || || |||||||| Sbjct 2257433 GTCAATGTCTTGACGAAGATCTGCAT 2257408 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2258391 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2258332 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2258331 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2258272 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2258271 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAGGGTCTTGACG 2258212 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2258211 AAGATCTGCAT 2258201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912