Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 >seq3 Length=3023347 Score = 174 bits (192), Expect = 2e-38 Identities = 382/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| | ||| || ||||| ||||| || ||||| | |||||| |||||||| ||| Sbjct 1886502 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1886561 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | || ||||| || || || || || ||||| || || ||||| || ||||| Sbjct 1886562 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1886621 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGG-CG 33471 || |||||||| |||||||| || || || || | | ||| || ||| || || Sbjct 1886622 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCA-AACGTCGATCG 1886680 Query 33472 CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1886681 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1886740 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 || | ||| ||||| ||| | | | || || || |||||||| | || Sbjct 1886741 GATCGAATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAG 1886800 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 | || ||||||| ||||||||||| || ||||| ||||| || ||||| | | Sbjct 1886801 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGAC 1886860 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 || | |||||||| | |||| || ||| ||| ||| || || || || ||||| Sbjct 1886861 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1886920 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 || |||||||| |||| |||| | ||| |||| ||||| | || || Sbjct 1886921 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1886980 Query 33771 A---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 | ||||| || ||||||||| || ||||| | ||||| |||||||| || || Sbjct 1886981 ATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1887040 Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854 || || || || ||||| | ||| || Sbjct 1887041 CTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Score = 159 bits (176), Expect = 4e-34 Identities = 377/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| ||||| Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || |||||||| ||||| ||||||||||| || | ||| || || || ||||| || || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33471 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1888669 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1888668 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1888609 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 | |||| ||| || || | || ||| || || | ||||||||||| | ||| Sbjct 1888608 ACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1888549 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1888548 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1888489 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1888488 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCA 1888429 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 33767 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1888428 GAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1888370 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 |||||||| || | || |||||| || | || | |||||| | ||||| || || || Sbjct 1888369 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGC 1888310 Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854 || || || || ||||| | |||||| Sbjct 1888309 TTCAGCTTTCTTGTACATTTGCCAGAT 1888283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947090984240