Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 seq10 86.0 7e-12 >seq3 Length=3023347 Score = 190 bits (210), Expect = 2e-43 Identities = 382/563 (68%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || || || | |||||||| || |||| || || || |||||| Sbjct 1886511 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1886570 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||||||||| ||||| || |||||||||||| || || || || Sbjct 1886571 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1886630 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 || ||||| || ||||| || ||||| | | |||||| | | || || | Sbjct 1886631 ATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCG----ATCGTTGATC 1886686 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 |||||| | | ||||| |||| || | ||| | || |||| || ||||| | Sbjct 1886687 AGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGA 1886746 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | || |||| | || || ||||| |||||||| | ||||| || Sbjct 1886747 ATTGAAGAGGAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTA 1886806 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| || || | || ||||| || |||||||| || ||||| | |||| | Sbjct 1886807 TGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGACTTCAGC 1886866 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | || ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 1886867 GGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGC 1886926 Query 93508 TGCaaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC- 93564 |||||||| |||| | ||||| | || ||||| || | ||| || || |||| Sbjct 1886927 GGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATTG 1886984 Query 93565 --CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||| ||| | | |||||| || | ||||| |||||| ||||||||||| || | Sbjct 1886985 TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGG 1887044 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 ||||| |||||||| | ||| || Sbjct 1887045 GCTTTCTTGTACATCTGCCAAAT 1887067 Score = 179 bits (198), Expect = 4e-40 Identities = 381/568 (67%), Gaps = 3/568 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| ||||| || ||||||||||| | || ||||| || || | |||||| Sbjct 1888850 TGAACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1888791 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || | || || | || || || ||||| | ||| || ||||| || ||| || Sbjct 1888790 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1888731 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || ||||| || || || || || | || || ||||| | | | Sbjct 1888730 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1888671 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| || ||||| || || || | || | ||| || | || | Sbjct 1888670 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCT 1888611 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | | ||| | ||| ||||| || || | | | || ||||| |||||||| | | Sbjct 1888610 CAACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1888551 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | || |||| ||| ||||| ||||||||| |||||||| || | | Sbjct 1888550 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1888491 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | ||| || || | || || | ||| || || || || ||||| ||||||| Sbjct 1888490 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCAT 1888431 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559 | || || |||||||| || | | |||| | ||| || ||||| || ||||| Sbjct 1888430 CAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1888371 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 |||| ||| ||| ||||||||||| || || | ||||||| | ||||| || || | Sbjct 1888370 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1888311 Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645 |||| ||||| |||||||| | ||| || Sbjct 1888310 CTTCAGCTTTCTTGTACATTTGCCAGAT 1888283 >seq10 Length=1391341 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 408818 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 408759 Query 126333 ACCCCAC 126339 | ||||| Sbjct 408758 ATCCCAC 408752 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 409255 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 409196 Query 126333 ACCCCAC 126339 | ||||| Sbjct 409195 ATCCCAC 409189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 671964 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 672023 Query 126333 ACCCCAC 126339 | ||||| Sbjct 672024 ATCCCAC 672030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860702549360