Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq2 93.3 9e-14 seq3 87.8 4e-12 >seq6 Length=2299419 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| |||||| | |||||||| | | ||||| Sbjct 641759 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCCGA 641700 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 |||| |||| || ||||| || |||||| ||||| |||||| |||||||| | Sbjct 641699 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGCTGGA 641640 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||| | ||| | || | | | ||| |||| ||||| |||||||| ||||| Sbjct 641639 GAACTACTTGACCGGCCTTACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 641580 Query 279884 CCT 279886 ||| Sbjct 641579 CCT 641577 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| ||| | || ||||| || || ||||| | || |||| |||| Sbjct 641288 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 641229 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | || || || Sbjct 641228 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGCTATGTTGC 641169 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||||| ||||| || |||| ||| || | | ||||| | Sbjct 641168 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGCT 641109 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 641108 GTGGCGTTA 641100 >seq2 Length=2818558 Score = 93.3 bits (102), Expect = 9e-14 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| || ||||| | || || || || || |||| | || |||||||||| Sbjct 460742 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTCACTGGCGAGAT 460801 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||||| |||| || | | |||||||| || ||| || || | || ||||| Sbjct 460802 GGAGGCCAACAAGGGTGGTGAGGTGTGGAAGCACCCAAACTTGGTCATCGGCTATGTCGC 460861 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 || ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| | Sbjct 460862 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 460921 Query 280349 GTGGCGCTATGCAAGTGGGC-AGGATCTGGA 280378 ||||| || || |||| |||||||||| Sbjct 460922 CTGGCGGTA-CCAGACGGGCGAGGATCTGGA 460951 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || || ||||||||||||||||| || ||| |||| || || || | || || Sbjct 460271 TCTTTCCGGCGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCTGA 460330 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | |||| |||| |||||||| || ||||| |||| | |||||| |||||||| | Sbjct 460331 TATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGA 460390 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 ||||| || | || | | |||| |||| ||||| ||||||||||| || Sbjct 460391 AAATTACCTCACTGGCCTCACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTT 460450 Query 279884 CCT 279886 ||| Sbjct 460451 CCT 460453 >seq3 Length=3023347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || ||||| || || ||||| || | ||| |||| || ||||| | ||||| Sbjct 1889177 TAATCCGATACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAGGAGATCATGTCCATA 1889118 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATG 251661 ||||||||||||||||| || ||||| ||||| | |||| || || | || | Sbjct 1889117 AAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGA 1889061 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 || ||||| |||||||| | ||||| | ||| || | | ||||||||||||| Sbjct 1889060 CGATCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1889006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836615631774