Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq5 87.8 3e-12 >seq3 Length=3023347 Score = 170 bits (188), Expect = 4e-37 Identities = 318/462 (69%), Gaps = 19/462 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || || || |||||||| || || ||||| |||||||| | | ||| | Sbjct 1888409 CTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1888468 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 1888469 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1888528 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598 | ||| ||| ||| || || || | || |||||| ||| || | || Sbjct 1888529 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1888588 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | | || | || | ||||| || ||||| |||| | |||||||||||| Sbjct 1888589 GAGTACC----TTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGACTG 1888644 Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||| || ||| | | || || | ||| | | || ||||| Sbjct 1888645 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1888701 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| | Sbjct 1888702 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1888761 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 1888762 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1888820 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||||| ||||| || ||| | ||||| ||||| |||| Sbjct 1888821 TGCATACCGACTTCGCATGCTTGTTGTTC---AGCCATCTCA 1888859 Score = 145 bits (160), Expect = 1e-29 Identities = 375/561 (67%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || ||| || ||||| |||| ||||| || || |||| || Sbjct 1887058 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1886999 Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | || || ||| |||||| |||| | | | | ||| Sbjct 1886998 ATCTTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCATATCATATGTCCTG 1886939 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || || || ||||| || ||||| || ||||| ||||| |||| |||| || Sbjct 1886938 GCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1886879 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||| | ||||| || || || |||||||| || || ||| | Sbjct 1886878 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCATGATGGAAAACATT 1886819 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC-CTGGATCCCGTCGAGCGTAA 42604 ||||| || ||| | || || | || ||||| ||| || | | ||||| | Sbjct 1886818 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTCTCAGC-AGCGTGA 1886760 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| || Sbjct 1886759 CTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1886700 Query 42665 CAACTGGATCGAGAGTCC-CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || ||| | ||||| | | |||| |||| || || | || | Sbjct 1886699 CAGGTGGATCTCTGATCAACGAT-CGACGTTTGCCACGAGGTTGGTGGCGTTCGCAGCGG 1886641 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTG 42782 | || || ||||||||||| || | || || || ||||||||||| ||| | |||| Sbjct 1886640 TAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGGTC 1886581 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || | ||||| || |||||||| || || ||||||| ||| |||| | Sbjct 1886580 TC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCACACA 1886522 Query 42843 GACTTTGCCTGCCTCCTGTTC 42863 || |||||||| ||| ||||| Sbjct 1886521 GATTTTGCCTGTCTCTTGTTC 1886501 >seq5 Length=2096082 Score = 87.8 bits (96), Expect = 3e-12 Identities = 196/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 ||||| | |||||| |||| || || | | || | |||||||| ||||| || ||| Sbjct 474847 CCCCAAAGGTCAAATTGCAACAAGCCTTCAGATG-CAGGGCTGCCAGAGTAGGACGAGTA 474789 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 || || || || |||| || | || | || | ||||| | ||| |||||||| Sbjct 474788 CGGGCCATCTTTCTCAGCCATCTCAACACTAGCTTCCACAGCGGCATGGTATATGGTCTC 474729 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| || |||| | ||| |||| | | || || |||| || ||||| Sbjct 474728 GAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATCAT 474669 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||| || || || || |||||||||| || || || | ||| ||| |||||||| Sbjct 474668 GAAAGTATCCGCAAGACCTTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAGTT 474609 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || || || |||||||| ||||| | || || | ||| |||||| Sbjct 474608 GCTTGCCTCAGGAACGGGGTAGTAGTTGACATCAATGATACGGTTTAGGTTG 474557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339034740640