Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq1 120 7e-22 seq9 98.7 2e-15 >seq6 Length=2299419 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || |||||||| ||||| | || |||||||| || || | Sbjct 331919 CGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGA 331860 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 ||| || || ||||| || || ||||| || | ||||| || || || ||||| | Sbjct 331859 GTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAA 331800 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || |||||||| || || | || ||| || || ||||||||||||||||| | Sbjct 331799 TCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGC 331740 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||||| |||||||| Sbjct 331739 CGGTCAGGGTCTTGACGAAGATCTGCAT 331712 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| |||||||| | ||| || || ||||| ||||||| Sbjct 331714 CATG-CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGT 331656 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| ||||| || | || || || |||||||||| ||||| || | Sbjct 331655 CGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGG---T 331599 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||| || || ||||| |||||||| || || | || | Sbjct 331598 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAG 331539 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||| |||||||| || || || ||||||||||| || ||||| Sbjct 331538 ACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 331484 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || ||||| |||||||| | || ||||| ||||| || | Sbjct 331122 CGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGA 331063 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || ||||| |||| |||||| || ||||||||||| || ||||| | Sbjct 331062 GCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAA 331003 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| || ||||| || || | || || || || ||||| ||||||||||||| Sbjct 331002 TCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCC 330943 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| |||||||| Sbjct 330942 CAGTGAGGGTCTTTACGAAGATCTGCAT 330915 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | || ||||| |||||||| | || || || |||||| Sbjct 331392 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 331333 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||||| || || || |||||||| || || || ||||| Sbjct 331332 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 331273 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||||||||||||||| || |||| ||||| ||| Sbjct 331272 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 331213 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 331212 AAGATCTGCAT 331202 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || |||| ||||| || || |||||||| ||||| | || ||||| || || || | Sbjct 332193 AGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTCGAGC 332134 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || || ||||| || || || ||||| || ||||| || Sbjct 332133 TGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 332074 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || || || || || | || || || || ||||||||||| ||||| || Sbjct 332073 TTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCC 332014 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || |||||||| || ||||||||| Sbjct 332013 GTGAGGGTCTTGACAAAGATCTGCATT 331987 >seq1 Length=3205512 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || |||| ||| || || || || || || || ||||| |||||| Sbjct 2257878 TCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2257819 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2257818 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2257759 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| |||||||||||||| |||| ||||| ||| Sbjct 2257758 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2257699 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2257698 AAAATCTGCAT 2257688 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | |||||||| || || || | ||||| || |||||| Sbjct 2257598 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2257539 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || || ||||| || ||||| || || || Sbjct 2257538 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2257479 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || ||||| || ||||| ||||| || |||| ||||||||| Sbjct 2257478 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2257419 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2257418 AAGATCTGCAT 2257408 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||| | ||||| ||||| || || || || || | || ||||| ||||| || ||| Sbjct 2258406 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2258347 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || ||||| || || || ||||| ||||| || || || || Sbjct 2258346 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2258287 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| ||||| || || || | || || ||||| || | |||||||||||| || Sbjct 2258286 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCT 2258227 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 2258226 GTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || |||| || || || ||||| || ||||||| Sbjct 2258199 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2258140 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || || || ||||||||| |||| Sbjct 2258139 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2258080 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||||||| || || || || | ||| ||| || || Sbjct 2258079 ATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACC 2258020 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 2258019 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2257973 >seq9 Length=1700053 Score = 98.7 bits (108), Expect = 2e-15 Identities = 198/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 326078 TCGGTCATGATCATCACATGACCGTAACG-AAGCGAG-GACGTGTCTTTGTACACTTTAC 326135 || ||||| ||||||| || ||||| || || | | ||||| || | ||| |||| Sbjct 1438072 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGACGT-TCGTA-TACTCTTTGT 1438129 Query 326136 CGGTTTGAAGGCCGAGAAT-TTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTT 326194 | | || ||||| | ||| || ||| | ||| |||||||||||||||| |||| || Sbjct 1438130 TGCTCTGGAGGCCCATAATCTTCTTTATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTG 1438187 Query 326195 GCCACGGAT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253 | || | | || ||||| ||||| | | ||| || ||||| ||||| |||||| | | Sbjct 1438188 GTCATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTT 1438247 Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313 ||||| ||||| || || ||| || | ||||| | || ||||| || || || Sbjct 1438248 GTCGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCTTTGGCAGAATCTCCTTCAGT 1438307 Query 326314 CAGAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 326352 ||||||||||| |||||| | || || |||| ||||| Sbjct 1438308 GAGAATGAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1438346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654188399492