Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq1 114 1e-20 >seq6 Length=2299419 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||||| || || ||||| ||||| ||||| ||| Sbjct 331713 ATGCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCG 331654 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | || || || ||| | ||||| || ||||||||||| Sbjct 331653 GAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGG 331594 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||||||||| || || | || | || | ||||| |||||||| Sbjct 331593 GGAATGCCCTCCTTATCTTGAATCTTCGCCTTCA-CGTTATCGATCGTGTCAGAAGACTC 331535 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| ||| ||||| || || || || || ||||||||||| Sbjct 331534 GACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 331484 >seq1 Length=3205512 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || ||||| || || || || || || || |||||| || ||| ||| ||||| Sbjct 2257893 AGGTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2257834 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| ||||||||||| || ||||| ||||| || || ||||| Sbjct 2257833 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2257774 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | ||||| ||||||||||| |||||||| | ||| || || Sbjct 2257773 TTCGCCTTCA-CGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCC 2257715 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || ||||| ||||| ||||| Sbjct 2257714 TGTCAAGGTCTTTACGAAAATCTGCAT 2257688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | |||| ||||||||||||||||| |||||||| || Sbjct 2258355 TCCTCCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTG 2258296 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || || | || | ||||| |||||||| || || | || | | Sbjct 2258295 TCTTGAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATC 2258236 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || || ||||| Sbjct 2258235 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003120899440