Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 210 2e-49 seq6 118 1e-21 seq1 116 4e-21 >seq3 Length=3023347 Score = 210 bits (232), Expect = 2e-49 Identities = 388/562 (69%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| |||||| || |||||| ||||| |||||||| | |||||||| ||| Sbjct 1888850 TGAACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1888791 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | || ||||||||||| || || || | ||| || || | ||||||| | Sbjct 1888790 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1888731 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | |||||| || || ||||| || || | ||||| | || |||| Sbjct 1888730 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAG- 1888672 Query 133064 CTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | | || ||||||||| || ||||| || ||||| |||||| || || || || Sbjct 1888671 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1888612 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 || | || | ||| ||| | | | | | | ||| | | ||| || ||||| | Sbjct 1888611 TCAACAGCAT-CAA-AAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAA 1888554 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | || || | || ||| | || ||||| ||||| || ||||| ||||| | Sbjct 1888553 GAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAAC 1888494 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 ||||||| || |||| || || | | ||| ||||| || || || ||||||||||| | Sbjct 1888493 GCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATAC 1888434 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || ||| || ||||| || || || ||| || || || ||||| |||||||| | Sbjct 1888433 CATCAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAA 1888374 Query 133361 AGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 ||| | ||||||| | || || |||||||||| || ||| ||||||| || | Sbjct 1888373 GGCGGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAG 1888314 Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439 |||| || ||||| |||||||| Sbjct 1888313 ACGCTTCAGCTTTCTTGTACAT 1888292 Score = 206 bits (228), Expect = 3e-48 Identities = 390/567 (69%), Gaps = 19/567 (3%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | || ||||| || |||| || ||||||| ||| |||||||| Sbjct 1886500 TGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAG 1886559 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || || || || |||||||| || ||||| || ||||| || || | || ||| | Sbjct 1886560 AAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATC 1886619 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| || || || || ||||| ||||||| | | | | ||||| | | Sbjct 1886620 CGGAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGAT- 1886678 Query 133064 CTTTGCTG-GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | ||| | | |||||| | || ||||| |||| ||| | |||||||| || || || Sbjct 1886679 CGTTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTC 1886738 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG-----GAACGCACGTAGGTGTCGA 133177 ||||| | || || | | ||| | || | ||| ||| | |||||| |||| Sbjct 1886739 TCGATCGAATTGAAGAG--GAAGTCACGCTGCTGAGAGTCAGAA---ATGTAGGTATCGA 1886793 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 ||||| || || |||||||||| | ||| ||||| ||| || || || ||||| | Sbjct 1886794 TGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAAC 1886853 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGACCAGATTTTCGTTGAC 133295 | || | || | | || ||||| | ||||| ||||| |||||||| |||||||| Sbjct 1886854 AGCGGACTTCAGCGGCTTGTACTTC--GCTCGAAAACCGCTCCACCAGATTCTCGTTGAC 1886911 Query 133296 GATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTC 133355 || |||||| ||||| ||||| ||||| || | ||||||||||| ||||| || Sbjct 1886912 AATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATC 1886971 Query 133356 GTTCAAG---CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 |||| | | ||||||| | || ||||||| || | ||| ||| ||||| Sbjct 1886972 ATTCAGGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCA 1887031 Query 133413 AAACGACGCCTCGGCTTTTTTGTACAT 133439 |||||| |||| |||||| |||||||| Sbjct 1887032 AAACGAAGCCTGGGCTTTCTTGTACAT 1887058 >seq6 Length=2299419 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| || || || |||| |||||| | | Sbjct 331484 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 331543 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| |||||| | ||||| Sbjct 331544 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 331602 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || |||| ||||| ||| |||||| || Sbjct 331603 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAA 331662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || ||||| | || || ||| Sbjct 331663 CATCCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGT 331699 >seq1 Length=3205512 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || |||||| | || Sbjct 2257973 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2258032 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||| || || | || ||| Sbjct 2258033 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2258092 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2258093 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2258152 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || | || || ||| | | ||||| Sbjct 2258153 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2258199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172712469760