Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 95.1 2e-14 seq1 82.4 9e-11 >seq3 Length=3023347 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1888679 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1888738 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1888739 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1888798 Query 102294 CTTATCTCTCGTGACGAGGGA 102314 || ||| ||||||||||||| Sbjct 1888799 CTCATCAGTCGTGACGAGGGA 1888819 >seq5 Length=2096082 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || | |||||| |||| ||||| |||| | |||| || || Sbjct 473814 GGTACCAATGGATACTCCAACGGTATTGTTCCCATGCTCCGCGCGTACGACGCGACTGCT 473873 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 ||||||||| |||||| || ||| ||| || | ||| |||| ||||||||| Sbjct 473874 CGCTATGTAGACCAAGGCGGTAACAAGCGCCCGGGTGCTTTTGCAATCTACCTTGAGCCA 473933 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||| |||||| || ||| | || | || || || || | ||||| | Sbjct 473934 TGGCACGCCGATATCTACGAATTCATCGACCTCCGCAAAAATCACGGCAAGGAGGAAG-T 473992 Query 112080 CGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | |||| ||||| ||||||| || |||||||| || ||||| || Sbjct 473993 CCGTGCACGCGACCTCTTCTATGCACTCTGGATCCCCGATCTTTT 474037 >seq1 Length=3205512 Score = 82.4 bits (90), Expect = 9e-11 Identities = 216/324 (67%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAA-AAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 |||||||||||||||| | ||| |||||||| | || || || || || ||| | Sbjct 2072233 CAAAACCATCCATCTC-GACAAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTCCCA 2072291 Query 16032 GGCA---TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 || | || || | |||| ||| || | ||| ||||| ||||| ||||||| | Sbjct 2072292 CCCATGTTGCCTCCCTTTCCGCGTGACTTACCAATGGCGTCAATTTCATCGATGAAGATG 2072351 Query 16089 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 ||||| || || | |||||| ||| | || || || ||||||||| || || Sbjct 2072352 ATGCAAGGGGCATTTTTCTTCGCG---GAC-GCGAAAAGGTCGCGTACACGCGAGGAACC 2072407 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||||| || |||||||| || || | | |||| || ||| ||||| | | Sbjct 2072408 AACACCGACGAACATCTCGACGAATTCGGAACCGGAGACGGAGAGGAAAGGGACGCTCGC 2072467 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 ||| || || |||| || || | ||||| |||||||| || || | ||||| Sbjct 2072468 TTCGCCGGCGGTGGCCTTAGCAAGTAACGTCTTTCCCGTACCAGGAGGTCCGGAGAGGAT 2072527 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 |||||| || || ||||| || || Sbjct 2072528 GGCACCGCGAGGGATCTTAGCCCC 2072551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742291370080