Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 114 8e-21 seq1 105 4e-18 >seq6 Length=2299419 Score = 114 bits (126), Expect = 8e-21 Identities = 157/214 (73%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||||| || ||||| || || ||||| || ||| | || |||| || Sbjct 332197 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTC 332138 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || || |||||||| | || | ||| |||||||| Sbjct 332137 GAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 332078 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | ||||| | ||| | ||| || |||| || || | Sbjct 332077 AATCTTCGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTG 332022 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||| |||||||||||||| Sbjct 332021 TCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 331988 Score = 104 bits (114), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 34764 AACCTCAAA---ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCT 34819 ||||||||| ||| || |||| || || ||||| |||||||||||||||||| | Sbjct 331136 AACCTCAAACGCACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 331077 Query 34820 TCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCC 34879 || | || || ||||| || || || || || | || |||||||| | || | || Sbjct 331076 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCC 331017 Query 34880 CTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACAT 34935 |||||||| ||||||| ||||| | ||||||| | ||| | ||| || | Sbjct 331016 TTCCTTGTCCTGAATCTTCGCCTTGAC----GTTATCGATGGTGTCCGAAGACTCCACCT 330961 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||| || || || || ||||| ||||| || ||||||||||| Sbjct 330960 CGAGGGTGATCGTCTTCCCAGTGAGGGTCTTTACGAAGATCTGCAT 330915 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| |||||| | || | || || ||||| || || || || Sbjct 331392 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 331333 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 331332 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 331273 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || ||||| || | |||||||| Sbjct 331272 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 331213 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 331212 AAGATCTGCAT 331202 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||||||||| | ||| |||| || || || || ||||| || Sbjct 331902 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAA 331843 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 331842 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 331783 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || || || || || ||||| || Sbjct 331782 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACG 331723 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 331722 AAGATCTGCAT 331712 >seq1 Length=3205512 Score = 105 bits (116), Expect = 4e-18 Identities = 147/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| |||||||||||||| || |||||||| | || | || |||| || || || Sbjct 2258397 GTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCC 2258338 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| |||| | || |||||||| ||||||| || Sbjct 2258337 GCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTC 2258278 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || ||||||| | ||| | ||| || || | || || || || || ||||| Sbjct 2258277 AC--AT--TATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAG 2258222 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||||||| Sbjct 2258221 GGTCTTGACGAAGATCTGCATA 2258200 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 2258163 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2258104 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | |||||||| || |||||| |||||| || Sbjct 2258103 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGAC--AT 2258046 Query 34911 GCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||||||| ||| | || || || | ||| ||||| || || || || || || Sbjct 2258045 --TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 2257988 Query 34967 CACAAAGATCTGCATA 34982 |||||||||||||||| Sbjct 2257987 CACAAAGATCTGCATA 2257972 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || ||||| | || |||| || |||||||| || || || Sbjct 2257598 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2257539 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| ||||| || Sbjct 2257538 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT 2257481 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | || ||||| || ||||| | ||||| Sbjct 2257480 --TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTT 2257423 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2257422 GACGAAGATCTGCAT 2257408 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || || || |||| |||| |||| ||| ||||| || || Sbjct 2257878 TCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2257819 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||| |||||||| ||||||| || ||| Sbjct 2257818 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2257759 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || || || || || || | ||||| || Sbjct 2257758 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2257699 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2257698 AAAATCTGCAT 2257688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633544609392