Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 199 7e-46 >seq3 Length=3023347 Score = 199 bits (220), Expect = 7e-46 Identities = 377/553 (68%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || ||||| | |||| || ||||| || |||||||| | ||||||||| Sbjct 1888843 CAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAGGT 1888784 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||| |||||||||| || | || || | |||||| |||| |||||||| || ||||| Sbjct 1888783 GAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAA 1888724 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| ||||||||||| || ||||| ||| | | ||| | || | | | || Sbjct 1888723 GAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGATC 1888664 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||| || |||||||| |||||| | |||| || || || ||||| | || Sbjct 1888663 GGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGC 1888604 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 || || | || || | | |||| | || ||| || || | ||| Sbjct 1888603 ATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTA 1888544 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||| ||| | ||| || || || ||||||||||||||| | |||||| Sbjct 1888543 GGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCCTCAGC 1888484 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | |||| || || | ||||| | ||| | || ||||| ||||| || ||||| || || Sbjct 1888483 CGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATCAGAGGC 1888424 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----AT 48602 |||||| || || |||||||| | || || ||||| |||| | | || || || Sbjct 1888423 AGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAG-GCGGTTAT 1888365 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| | || | ||||| |||||||| |||||| | |||||||| ||||| | Sbjct 1888364 TCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACGCTTCAG 1888305 Query 48663 CTTTTTTGTACAT 48675 |||| |||||||| Sbjct 1888304 CTTTCTTGTACAT 1888292 Score = 161 bits (178), Expect = 2e-34 Identities = 318/466 (68%), Gaps = 16/466 (3%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||| || |||||| ||||||||||| || || || |||| || ||| | | Sbjct 1886511 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1886570 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || |||||||| |||| || ||||| || ||||||||| Sbjct 1886571 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1886630 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTG-TCTG 48308 || || || || || |||||||| | |||| | || | || || ||| || | Sbjct 1886631 ATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACG--TCGATCGTTGATCAG 1886688 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || ||||| || | ||||| ||||| |||||| || ||||| || | Sbjct 1886689 AGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAAT 1886748 Query 48369 GGAAGAGCTTCTTGCACTCAC-CTGC-----GTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 |||||| | | |||| |||| ||| | || |||||| || || | Sbjct 1886749 TGAAGAG------GAAGTCACGCTGCTGAGAGTCAGAAATGTAGGTATCGATGAGGAGAG 1886802 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||| | || ||||| | || || || ||||||||| || || || | | | | Sbjct 1886803 AGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCGGACTT 1886862 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 || | || ||||| | || || | ||||| ||||||||| ||||| || || || | Sbjct 1886863 CAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGG 1886922 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTT 48588 |||| ||||| || || ||||||| | | ||||||||| ||||| Sbjct 1886923 AAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTT 1886968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532636981760