Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 136 7e-27 >seq3 Length=3023347 Score = 136 bits (150), Expect = 7e-27 Identities = 358/540 (66%), Gaps = 11/540 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| ||| || || ||||||||||||||| || || ||| Sbjct 1888283 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1888342 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | || || | ||| |||| | ||| || | | | | |||| || ||| || Sbjct 1888343 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1888401 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | || | || || ||||| |||||||||||||| || |||||||| || ||| | Sbjct 1888402 GCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAGCG 1888461 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1888462 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1888521 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770 |||||| | ||| ||| || || ||| | ||| || ||||| | ||| Sbjct 1888522 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1888580 Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | ||| | || |||| ||| | ||| ||| ||| | |||| |||||||| Sbjct 1888581 AGCAACGCGAGTAC--CTTTTTGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1888638 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | ||||| | |||||| | | || | || |||| ||||| | || || Sbjct 1888639 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1888698 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| || |||||||||||||| || ||| |||||| || || | ||||||||| | || Sbjct 1888699 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1888758 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||| ||||| || |||||||| | |||||||| Sbjct 1888759 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1888818 Score = 132 bits (146), Expect = 9e-26 Identities = 381/571 (67%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||| || || || ||||| |||||||||| ||| || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGA---CGAGCAGCATTT--TCT 25589 |||| || || || |||| || | | || || || ||| | ||||| | | Sbjct 1887007 TCCAAAGATATCTTCGACTGGAACAAT--AACCTGAATGATAACGAACGCCATTTCATAT 1886950 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 || || || ||||||| ||||| || || || ||||| || |||||||||||| || Sbjct 1886949 CA--TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1886892 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | || | || ||||| || || || | | ||||| || || |||||||| Sbjct 1886891 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCAT 1886832 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768 || ||||| | ||||| || || | || | ||| || |||||| | ||| Sbjct 1886831 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATTTCTGAC- 1886774 Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 || | | || | || || || | | |||||| ||||| || ||||| |||| Sbjct 1886773 TCTCAGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1886714 Query 25828 GCGCGGTGGGCCATGAAGTGGATC----AACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 | ||||||| | | ||||||| | || | || || ||||||| | | || | Sbjct 1886713 ACCGAGTGGGCCCTCAGGTGGATCTCTGATCAAC--GATCG--ACGTTTGCCACGAGGTT 1886658 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 ||| || || || || || || || ||||| ||| ||| || ||||| | |||||||| Sbjct 1886657 GGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1886598 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||| ||| | | | || | |||||| || | |||||| ||||| || || || ||| Sbjct 1886597 GCTGAAGAA-ACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGG 1886539 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 |||| || | |||| |||||||||||| || Sbjct 1886538 ACGAAGGGATGCACACAGATTTTGCCTGTCT 1886508 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209 |||||||| || |||||| |||| ||||| |||| ||| || || | |||||| | Sbjct 1889011 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTGCTCATT 1889070 Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269 ||| || || || | | ||||| || | ||||| |||||||||||||| | | Sbjct 1889071 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACATGA 1889128 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 | || ||| | |||||||||||||||||||| ||| |||| Sbjct 1889129 TCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1889168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844637452160