Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 >seq1 Length=3205512 Score = 109 bits (120), Expect = 2e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||||||||| || || ||| || || || ||||| ||||| || ||| Sbjct 3070363 TTGACGAGACGACGCTGAATGTATCCCGTTTCAGCAGTCTTCACAGCAGTATCGATAAGA 3070304 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || |||||||| |||| || |||||||| | ||||| ||| ||| ||||| | || | | Sbjct 3070303 CCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCTTGCGG-CGTGAGCCCACGAAGATA 3070245 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | || ||||| || || |||||||| | |||| ||| || || || || || Sbjct 3070244 CGAGTTTTCCACGAATCCGCGGGCCTCGGGACTGTAGTCGTCCTTCGTGAAATGAGGTAG 3070185 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 |||| | | |||| | || |||||| ||| ||||| Sbjct 3070184 TGTCCGATGCCGGAAGCCAAAGGGTATACGCCGTCCTTCAAC 3070143 Score = 104 bits (114), Expect = 7e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| |||||||| ||||||||||||||||| ||||| | | || | Sbjct 1365292 CGATCGTCATACGAGAAGGAATAGCGTGGGGATTGATGATGATATCGGGAGTAATGCCTT 1365233 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 | ||||||||||||||||| | || | | ||| || | || || || ||||| || || Sbjct 1365232 CGGCAGTGAAGGGCATATCTTCTTGC-CGATATGTGATACCGATGGTACCCTTCTGCCCA 1365174 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 |||||||| ||||| || ||||| Sbjct 1365173 TGACGAGAGGCAAACTTGTCGCCAAT 1365148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817335992718