Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq6 96.9 3e-15 >seq1 Length=3205512 Score = 109 bits (120), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 29578 ACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||||| |||||| || || || || || || || ||||| | || ||||| ||| || Sbjct 2257617 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2257558 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 || ||||| ||||| | || | | ||||| || || || |||||||| ||||| || Sbjct 2257557 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2257498 Query 29697 TAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | |||||| | || | |||||| ||| || ||||||||||| || || | Sbjct 2257497 -AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCT 2257439 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || || || || |||||||| Sbjct 2257438 TGCCCGTCAATGTCTTGACGAAGATCTGCAT 2257408 >seq6 Length=2299419 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 29579 CCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGA 29638 ||||||| || || || || || ||||||||||| || | || |||||| || |||| Sbjct 331409 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 331350 Query 29639 GTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTA 29698 | || ||||| || | ||||| | ||||| || || || || ||||| ||||| || | Sbjct 331349 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 331290 Query 29699 ATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 || ||||| | || | |||||||| || || || || || || || || | Sbjct 331289 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 331230 Query 29759 CAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || || || |||||||| Sbjct 331229 CAGTCAACGTCTTCACGAAGATCTGCAT 331202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219134271974