Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq6 109 1e-18 >seq1 Length=3205512 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||||||||| |||||||| || || ||||| || ||| ||| || || || | || Sbjct 2257891 GTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTG 2257832 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 |||||||| ||||| | | ||| || || ||||| || |||||||| || |||||||| Sbjct 2257831 CTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTT 2257772 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || ||||| || || || || || || | ||| |||||||| ||||| Sbjct 2257771 CGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGT 2257712 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 ||| |||||||| || |||||||| Sbjct 2257711 CAAGGTCTTTACGAAAATCTGCAT 2257688 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 |||||||| || || ||||| || || | | |||||| || | ||| || || ||||| Sbjct 2258391 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2258332 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | ||| || || || || || |||||||| ||||||||||| || || ||||| Sbjct 2258331 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2258272 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || ||||| || || ||||| ||||| || |||||||||||||| | ||||| || Sbjct 2258271 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCTGTGAGGGTCTTGACG 2258212 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 2258211 AAGATCTGCAT 2258201 >seq6 Length=2299419 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| ||||| || || || ||| | | || || || ||||| Sbjct 331914 TGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGC 331855 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || || | || || || || || || || ||||| || ||||||||| Sbjct 331854 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTT 331795 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || ||||| ||| | || || || | || ||||||||||| ||| Sbjct 331794 GCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTC 331735 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 331734 AGGGTCTTGACGAAGATCTGCAT 331712 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | |||| || || || ||||| || ||||| || || Sbjct 331710 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCGGAG 331651 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || || || || || || ||||| | | || || || || || Sbjct 331650 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 331591 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||||||||| || || || || || ||||| ||| || || || Sbjct 331590 ATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACC 331531 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || || ||||| Sbjct 331530 TCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 331484 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 || || || || || || ||||| || ||||| ||||| || | | |||||||| || Sbjct 331407 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGC 331348 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || || ||||| | | || || || || || || || ||||| || || ||| Sbjct 331347 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 331288 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || || || || ||||| ||| | || || || | || |||||||| || Sbjct 331287 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 331228 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || || |||||||| Sbjct 331227 GTCAACGTCTTCACGAAGATCTGCAT 331202 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649 |||||||||| | | || ||||| || || ||||| || ||||| || || || | Sbjct 331133 CTCAAACGCAC--CGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTG 331076 Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 | ||||| || || || || || || || || | | || || || || || |||||| Sbjct 331075 CGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCT 331016 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| || |||||||| || || || || || || || || || || || || | Sbjct 331015 TCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGG 330956 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || || | |||||||| || |||||||| Sbjct 330955 GTGATCGTCTTCCCAGTGAGGGTCTTTACGAAGATCTGCAT 330915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827023884746