Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-33 seq7 86.0 9e-11 >seq3 Length=3023347 Score = 161 bits (178), Expect = 1e-33 Identities = 305/442 (69%), Gaps = 5/442 (1%) Strand=Plus/Plus Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 |||| | ||||| || || || ||| |||||||| |||||| || ||| ||||| | Sbjct 1888378 CGACAATGAGCGTCACTTTGTCTCGCATGTCCTCGCGTTTTTT-GCTGCCTCTGATGGTA 1888436 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||||||||| | | ||||| ||| ||||| || | | ||||| |||| Sbjct 1888437 TCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTT 1888496 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||||||||| || || ||||| |||||| || |||||||| || || | Sbjct 1888497 GCTTCTACGGGTTCCAAATTATGATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTA 1888556 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 |||| || ||| |||||||||| | || |||| ||| || | || || Sbjct 1888557 TCGATACTTACATCAAGGACCCTAAGCAACGCGAGTACCTTTTTGATGCTGTTGAGACCA 1888616 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | || | | ||||| |||||||| | |||||| | | | ||| Sbjct 1888617 TTCCCTGTGTCAAAAGGAAGGCGGACTGGGCACTACGCTGGATCTCCGA-TCGTCGCTCC 1888675 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||| ||||| ||||| | |||| ||| ||||| || |||||||| || ||||| || Sbjct 1888676 ACA-TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTC 1888734 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 |||| | | ||||| ||| | |||||||| ||||||||||| || | || ||| || Sbjct 1888735 TTTCGCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGAC-TCACCTTCTCCA 1888793 Query 1456288 ACGAATTTATCAGTCGCGACGA 1456309 | ||| | |||||||| ||||| Sbjct 1888794 ATGAACTCATCAGTCGTGACGA 1888815 Score = 129 bits (142), Expect = 8e-24 Identities = 367/550 (67%), Gaps = 27/550 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| | |||| || |||| || |||||||| |||| ||| |||| Sbjct 1887068 GATTTGGCAGATGTACAAGAAAGCCC-AGGCTTCGTTTTGGACGTCCGAAGAGATCGATA 1887010 Query 1455835 TCGGCGCCGACACGGTCCACTGGG----TGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | || ||||| | | |||| || |||| ||||||||||| Sbjct 1887009 TGTCCAAAGATATCTTCGACTGGAACAATAAC-CTGAATGATAACGAACGCCATTTCATA 1886951 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | ||||| || |||||| ||||| ||| || || || |||||| |||| | Sbjct 1886950 TCATATGTCCTGGCATTTTTT-GCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1886892 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || ||| || || || ||| | || | || | ||||| || ||||||||| Sbjct 1886891 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCAT 1886832 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || |||||||| ||||| ||||| ||||| ||||| ||||| |||||| | ||| | Sbjct 1886831 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACTC 1886772 Query 1456071 GGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || || || ||| |||||| | ||||| || | || | || | | | || Sbjct 1886771 --TC-AGCAGCGTGACTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAA 1886715 Query 1456128 GGCCGACTGGGCGATGAAGTGGATC----AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 | |||| ||||| | | ||||||| | ||| || ||||| |||||| | | Sbjct 1886714 GACCGAGTGGGCCCTCAGGTGGATCTCTGATCAACGA-----TCGAC-GTTTGCCACGAG 1886661 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCT 1456241 | | || | || || || || || || ||||| ||||| || | || ||| | |||| Sbjct 1886660 GTTGGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGG-ATCTTTTGCTTCAATCT 1886602 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | ||||| ||||| || || |||||||| ||| || |||| |||||| | || ||| Sbjct 1886601 TCTGGCTGAAGAAACGAGGTCTCATGCCTGGT-TTAACCTTTTCTAACGAACTGATTAGT 1886543 Query 1456302 CGCGACGAAG 1456311 || ||||||| Sbjct 1886542 CGGGACGAAG 1886533 Score = 105 bits (116), Expect = 1e-16 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || || | ||| || |||||||| |||| |||||||||||||||||| || ||| | Sbjct 1888993 CTTCCTGTAGGGCTGATTGGCATGAATGCCAA-GCTCATGTGCCAGTACATCGAGTTT-G 1889050 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | || || || |||||| || ||||| ||| | ||||||||| || | ||||| Sbjct 1889051 TTGCAGATCGTCTGCTCATTGCCCTCGGTGGCGAA-AAGCACTACAACGCGACAAACCCC 1889109 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 ||| | ||||| ||||||| | |||| ||||||||||| || ||| || || Sbjct 1889110 TTCGACTTTATGGACATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTA 1889169 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 | || ||| | |||||||| ||||| || Sbjct 1889170 TCGGATTACTCGAAGGCCGGTGTCACGGC 1889198 >seq7 Length=1674227 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 165765 TGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCG 165824 ||||||||| |||| ||||| ||||||||| ||| | |||||||| | || |||| Sbjct 977567 TGGGGCGCCATCGGCGCGCGTACCACCGAGTCTCAGCTCCACCGCGAACTCGCCTCGGGT 977626 Query 165825 CTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGAT 165884 | | | ||||| || |||||||| | |||||||||||||| | ||| ||||| Sbjct 977627 GTCTCCTTCCCCATCGGGTTCAAAAATGGGACCGACGGCAGCGTCTCCGTCGCCGTCGAT 977686 Query 165885 GCCGTGCGCACTGCCGCCCAGCCACACACCTT 165916 ||| ||||| | || | | || ||| |||| Sbjct 977687 GCCATGCGCTCATCCTCAAATCCGCACGCCTT 977718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809849674268