Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 183 4e-41 seq5 84.2 3e-11 >seq3 Length=3023347 Score = 183 bits (202), Expect = 4e-41 Identities = 365/537 (68%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | |||||| | |||||||||||| || | |||||||| ||||| || || Sbjct 1886532 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1886591 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || ||||| || || | |||||||||||| || |||||||| |||||||| ||||| || Sbjct 1886592 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCTGCGAAC 1886651 Query 39758 GCAACAAGTCTC-TCTC---CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 || || | ||| | | ||| | || | || | |||||| | | ||||| || Sbjct 1886652 GCCACCAACCTCGTGGCAAACGTCGATCGT-TGATCAGAGATCCACCTGAGGGCCCACTC 1886710 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 | |||| ||| || || || || || || || | ||| ||||| | | | | Sbjct 1886711 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGTCACGCTGCTG 1886770 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || || || ||||| || | ||| || |||| || || |||||||| || Sbjct 1886771 AGAGTCAGAAATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1886830 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | ||||| ||||| |||||||| | |||||| |||||| || |||| | Sbjct 1886831 CATGATCTGGAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1886890 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 ||| ||| ||| || || || || || || ||||||||||||||||| |||| | Sbjct 1886891 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1886950 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCAGTCATTGATATCTTTTGATAT 40110 || |||| ||| | ||| ||| |||||||| ||||||||| || || Sbjct 1886951 TATGAAATGGCGTTCGTTATCATTCAGGTTATTGTTCCAGTCGAAGATATCTTTGGACAT 1887010 Query 40111 ATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||| | ||||| | ||||||||||| |||| || || |||||||| | ||| || Sbjct 1887011 ATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Score = 118 bits (130), Expect = 1e-21 Identities = 369/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || || Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||||||||| || |||||||| || | ||| || || | || ||||| || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 || ||||| ||||| || || || || || || || | || ||| | || || | | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1888670 Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || ||||| ||||||| || || ||| | || ||||| || || || || Sbjct 1888669 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTC 1888610 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 | ||||| ||| || || | || | | || || | || ||||| || | || Sbjct 1888609 AACAGCATCAAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1888550 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || ||||| ||||| ||| || || || ||||| || || | || Sbjct 1888549 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1888490 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||||| | || | || | | || || || || || ||||| Sbjct 1888489 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCATC 1888430 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080 | || |||||||| || | ||||| | ||| | |||| | || || Sbjct 1888429 AGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1888371 Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||||||||||| | || ||||||||| | || | |||||| || ||||| || |||| Sbjct 1888370 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1888311 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || || |||||||| | ||| || Sbjct 1888310 CTTCAGCTTTCTTGTACATTTGCCAGAT 1888283 >seq5 Length=2096082 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||| | || ||||| || |||| || || || || || ||| | || ||| | | Sbjct 473746 CCTGTAGCCCGAATGTTGTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATA 473687 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| |||| || ||||| || ||||| ||| || ||| ||||| || || Sbjct 473686 GCACAGTTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGG 473627 Query 69964 AAACAGCTAGA-CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 ||||| | || || |||| ||| || ||||| || || | ||| || || ||||| Sbjct 473626 AAACA-CGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTG 473568 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 |||||| | |||||| | || ||||| ||||||||||| || | ||| | | Sbjct 473567 AGTGAAGTAACGTTCAGACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCC 473508 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| || | || || ||||| | ||| ||||| || |||||| Sbjct 473507 G-TGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCT 473462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960