Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 165 6e-36 >seq3 Length=3023347 Score = 165 bits (182), Expect = 6e-36 Identities = 393/579 (68%), Gaps = 35/579 (6%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| ||||| ||||| || |||||||| | ||||| | ||| || Sbjct 1887067 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1887008 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA-AACCACAAGAAAAAC-------ATTTTA 43841 | ||||| || | || || || | || |||| || | ||| |||| | Sbjct 1887007 TCCAAAGA--TATC---TTCGACTGGAACAATAACCTGAATGATAACGAACGCCATTTCA 1886953 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 |||| | || |||| |||||||| || |||||| || ||||| || ||| |||| Sbjct 1886952 TATCATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGG 1886893 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 |||||| || ||||| ||| | |||| || ||||||||||| || || || Sbjct 1886892 AGCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTCCAGATCA 1886833 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-- 44019 || ||||| ||||| ||||||| ||| ||| || || ||||| ||||| || Sbjct 1886832 TGATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATTTCTGACT 1886773 Query 44020 -TGGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACA 44076 | ||| || || | || | || ||| |||| || || |||| |||| | || || Sbjct 1886772 CTCAGCAGCGTGA--CTTCC--TCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCA 1886718 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAAT--TCAAATGATT--CTTTTGGAGAACGAC 44132 || | || |||||||| | ||||| | |||| ||| | |||| |||| Sbjct 1886717 GAAGACCGAGTGGGCCCTCAGGTGGATCTCTGATCAAC-GATCGACGTTTGCC--ACGAG 1886661 Query 44133 TT--GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 | || ||||| |||| || ||||| || ||||| || ||||| ||||| | || || Sbjct 1886660 GTTGGTGGCGTTCGCAGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTT 1886601 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | |||||||||||| | |||||||| || || ||||| || || | || ||||| Sbjct 1886600 CTGGCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCG 1886541 Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTG---CTTGTT 44286 || ||||| | || |||||||| || |||||| Sbjct 1886540 GGACGAAGGGATGCACACAGATTTTGCCTGTCTCTTGTT 1886502 Score = 123 bits (136), Expect = 2e-23 Identities = 379/573 (66%), Gaps = 26/573 (5%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| ||||| | ||||| || ||||| || |||||| | || || Sbjct 1888283 ATCTGGCAAATGTACAAGAAAGCTGAAGCGTCTTTCTGGACCGCCGAAGAAATGGACCTG 1888342 Query 43790 ACTAAAGACTTAGCAC-ATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATA 43843 | ||||| | ||| | |||| | || |||| | |||| || || ||| | Sbjct 1888343 TCAAAAGATCTC-CACGACTGGAATAACCGCCTTAA--CGACAATGAGCGTCACTTTGTC 1888399 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || | |||||||||||||| || || || ||||| || || | ||| Sbjct 1888400 TCGCATGTCCTCGCGTTTTTTGCTGCCTCTGATGGTATCGTCAACGAGAACCTTGTTGAG 1888459 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || || | || ||||| | || || || || || || ||||| |||||| Sbjct 1888460 CGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1888519 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---T 44020 || |||||||| || || | ||| ||||| || ||||| |||||||| || | Sbjct 1888520 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1888579 Query 44021 GGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATA 44078 ||| || || | | | | ||| |||| | || || | | |||| | | ||| | Sbjct 1888580 AAGCAACGCGA-GTACC---TTTTTGATGCTGTTGAGACCATTCCCTGTG-TCAAAAGGA 1888634 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT-----TTTGGAGAACGACT 44133 | || |||||||| || ||||| | | | | || |||| || ||| | Sbjct 1888635 AGGCGGACTGGGCACTACGCTGGATC--TCCGATCGTCGCTCCACATTTGCTGAGCGATT 1888692 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 ||||| || || | |||||| ||||||||||| || || || || || | || || || Sbjct 1888693 AGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTG 1888752 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 ||| ||||| || || | |||||||| | || || || ||||| | || |||||||| Sbjct 1888753 GTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGA 1888812 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || | ||| ||| || || |||||||| Sbjct 1888813 CGAGGGAATGCATACCGACTTCGCATGCTTGTT 1888845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455932184070