Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 84.2 3e-11 >seq3 Length=3023347 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1888679 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1888738 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1888739 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1888798 Query 94918 CTTATCTCTCGTGACGAGGGA 94938 || ||| ||||||||||||| Sbjct 1888799 CTCATCAGTCGTGACGAGGGA 1888819 >seq5 Length=2096082 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || ||||| | || | |||||| |||| ||||| |||| | |||| || || Sbjct 473814 GGTACCAATGGATACTCCAACGGTATTGTTCCCATGCTCCGCGCGTACGACGCGACTGCT 473873 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 ||||||||| | |||| || ||| | ||| || | ||| |||| |||||| Sbjct 473874 CGCTATGTAGACCAAGGCGGTAACAAGCGCCC---GGGTGCTTTTGCAATCTACCTTGAG 473930 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| |||||| || ||| | || | || || || || | ||||| Sbjct 473931 CCATGGCACGCCGATATCTACGAATTCATCGACCTCCGCAAAAATCACGGCAAGGAGGAA 473990 Query 104687 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 | | |||| ||||| ||||||| || |||||||| || ||||| || Sbjct 473991 G-TCCGTGCACGCGACCTCTTCTATGCACTCTGGATCCCCGATCTTTT 474037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260697929360