Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq3 87.8 2e-12 >seq5 Length=2096082 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| || |||| |||||| ||||| ||| | |||||||| || | ||| | | Sbjct 475211 ACGTCAAGGCAATCTACAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTCCTTGACCTCG 475270 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || || | |||| |||||| || || || || ||| | || || || Sbjct 475271 CTGCAGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 475330 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 ||| || | |||| | | ||||||| | ||||||||| | ||||||||||| | Sbjct 475331 CGACGCTCGGCCAGCTCACCAGCATGCATTTTTACGGCTGGAAGCGTGGGCTCAAGACTG 475390 Query 20796 GCATGTACTATCTGCGGACCCG 20817 ||||||| || ||||| || || Sbjct 475391 GCATGTATTACCTGCGCACGCG 475412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 79630 GCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCA 79688 ||||||||||| | | | | || ||| ||||| |||| | |||| ||| || || Sbjct 473740 GCCCGAATGTT-GTGAATATTGAGTCCAATGCCACCGGCCGTCTTGCTGATCATAGCACA 473682 Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC- 79747 | ||| || || || ||||| ||||| || ||||| || ||||| |||||||| | Sbjct 473681 GTTCTTCAGAGTTTCATAGATTCCCTCAATGGAGTCTTCTTTCATGCAAACCAGGAAACA 473622 Query 79748 --AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGT 79805 |||| || || || ||| ||||| ||||||||||| || || | ||||| || Sbjct 473621 CGAGCT---CAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGT 473565 Query 79806 GAAG-AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGT 79864 |||| ||| || | ||| || | ||| || || | |||| || || |||||| Sbjct 473564 GAAGTAACGTTCAG-ACATTAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGT 473506 Query 79865 GGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | |||||||| || |||||||||| | || ||| || Sbjct 473505 GAATGCCGACAGCTACGCGCATGATCATGTGCTGTGG 473469 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| ||| | ||||| | ||| Sbjct 474037 AAAAGATCGGGGATCCAGAGTGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 473978 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 || || || || |||| || || ||| ||||||||||| ||||| || ||||| Sbjct 473977 TGATTTTTGCGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGGTAGATT 473918 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | |||| ||||||| ||||| |||| || || || || || || | | Sbjct 473917 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGGTCTACATAGCGAGCAGTCGCGTCGTAC 473858 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGG 79594 | ||||||||||| || || |||| || Sbjct 473857 GCGCGGAGCATGGGAACAATACCGTTGG 473830 >seq3 Length=3023347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332 |||||||| ||||||| || || || || ||| |||| ||| ||| | || | Sbjct 1889035 CAGTACATCGAGTTTGTTGCAGATCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1889092 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 || || || ||||| ||||||| ||||| | ||||| ||| | |||||||||||| Sbjct 1889093 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCCTTGCAGGGGAAGACCAAC 1889151 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||||||||||||||| |||||| || ||| Sbjct 1889152 TTCTTTGAGAAGCGGGTATCGGATTACTCGAAG 1889184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160