Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq1 159 4e-34 seq8 93.3 5e-14 seq5 87.8 2e-12 >seq6 Length=2299419 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 331712 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 331771 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 331772 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 331831 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||||||||||| || || || | ||||| ||| Sbjct 331832 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAAT 331891 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 331892 ATCCAGAAGGAGTCGACTCTTCATCT 331917 Score = 170 bits (188), Expect = 2e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 331987 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTC 332046 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || |||||||||||||| || |||||||| ||||| Sbjct 332047 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 332106 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || |||||||| || ||||| |||||||||| ||| ||||| | ||||| || Sbjct 332107 GCAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAA 332166 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | |||| ||||| ||| ||||| || Sbjct 332167 TATCCAGAAGGAGAGCACCCTTCACCT 332193 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 331484 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 331543 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || |||||||| ||||| || |||||| Sbjct 331544 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 331603 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | || || || | |||||||| Sbjct 331604 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAAC 331663 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| | ||||| ||| | ||||| || || || Sbjct 331664 ATCCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 331710 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 330915 ATGCAGATCTTCGTAAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 330974 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||||||||| ||||| || || |||||| Sbjct 330975 GACACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAG 331034 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| |||||||| | || ||||| | |||||||| Sbjct 331035 CAGCGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 331094 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 331095 ATCCAGAAGGAGTCGACTCTTCATCT 331120 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || || ||||| || || || ||||| |||||| | Sbjct 331202 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 331261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 331262 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 331321 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| ||||| || | || ||||| | |||||||| Sbjct 331322 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAAC 331381 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| || || || ||| Sbjct 331382 ATTCAGAAGGAGTCGACCCTCCAT 331405 >seq1 Length=3205512 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || |||||||| || ||||| Sbjct 2257408 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2257467 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 2257468 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2257527 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || ||||||| || || || | || || ||| Sbjct 2257528 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAAT 2257587 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || |||||||| Sbjct 2257588 ATCCAGAAGGAGTCTACCCTTCATCT 2257613 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || | ||||| ||||| Sbjct 2257973 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2258032 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||| |||||||| || || || || || Sbjct 2258033 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2258092 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||||| || ||||| | ||||| || Sbjct 2258093 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2258152 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || ||| | ||||||||||| || Sbjct 2258153 ATCCAGAAGGAGTCGACTCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2258199 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 2257688 ATGCAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2257747 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || |||||||||||||| || |||||||| |||||| Sbjct 2257748 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2257807 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| | ||||||| || || || | || || || Sbjct 2257808 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAC 2257867 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || ||||| || || Sbjct 2257868 ATTCAGAAAGAGTCTACTCTGCACCT 2257893 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/282 (65%), Gaps = 52/282 (18%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || ||||||||||| || || |||||||||||||| Sbjct 2257125 ATCATGCAGATCTTCGTTAAGACTCTCACCGGCAAGACCATCACACTTGAGGTTGAGTCT 2257184 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG------------- 27509 |||| ||| | ||| | ||||| || |||||||| |||||||| Sbjct 2257185 TCCGATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGTGGGTCCCTCGC 2257244 Query 27510 AA---------------------------------------TTCCTCCAGACCAGCAGCG 27530 || ||||||| ||||| || || Sbjct 2257245 AACGTGATCCCTAGTTTCATATCACTCATAGTCGCTTAGCATTCCTCCCGACCAACAACG 2257304 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| ||||| ||||| || || |||||||||| ||||| | | ||||| || |||| Sbjct 2257305 TCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACATTGTCTGACTACAACATCCA 2257364 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||||| ||||| |||||||| || || || || Sbjct 2257365 GAAGGAATCGACTCTCCATCTCGTCTTGCGCCTCCGTGGCGG 2257406 >seq8 Length=1834011 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || |||||||| || ||||| ||||| || | ||| ||| Sbjct 422714 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 422655 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| || ||||| ||||||| || || || || || || ||| | ||||| ||||| Sbjct 422654 CTCAGC-GATTATAACATCCAAAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCGG 422596 Query 27630 TGG 27632 ||| Sbjct 422595 TGG 422593 >seq5 Length=2096082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| ||||| || |||||||| |||||||| || |||||||||||| | ||||| Sbjct 475412 CGCGTGCGCAGGTAATACATGCCAGTCTTGAGCCCACGCTTCCAGCCGTAAAAATGCATG 475353 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 |||||| | || || || || || | || ||| ||||| || ||||| ||| Sbjct 475352 CTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGCAG 475293 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAA 80185 ||||| || ||||| ||||| || | |||| Sbjct 475292 ATGAACGCTCCACGGTCTGCAGCGAGGTCAA 475262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310300195680