Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 114 8e-21 seq1 100 2e-16 >seq6 Length=2299419 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||||||||| || |||||| ||||||||||| || ||||| || || ||||||| | Sbjct 331409 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 331350 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || || || || || || || ||||| ||||| || || | ||||||||||| || Sbjct 331349 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 331290 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || | || ||| || || ||||| |||||| || | || ||||| || Sbjct 331289 TC-TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 331231 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| ||||| || ||||||||| Sbjct 331230 CCAGTCAACGTCTTCACGAAGATCTGCATG 331201 >seq1 Length=3205512 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 ||| |||||| |||||||| || |||||||| ||||| |||||||| || |||| || | Sbjct 2258408 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2258349 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 ||| || || ||||| || | || || ||||||||||| | || ||||||||| ||| Sbjct 2258348 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCT-TGA 2258290 Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || | || || || || ||||| ||| || |||| || ||||| || Sbjct 2258289 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTG 2258230 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || |||||||| Sbjct 2258229 CCTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | || ||||| |||||| || ||||| || || ||| Sbjct 2258199 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2258140 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | |||||||| ||||| || Sbjct 2258139 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2258080 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||| | ||| || || |||||||| ||| || Sbjct 2258079 ATGCCCTCCTTATCCTGGATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2258021 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | ||||||||||| |||||||| Sbjct 2258020 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2257973 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || || |||||| || || || ||||| ||||| || ||| | || || Sbjct 2257617 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2257558 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| |||||||| || || || | |||||| ||||| || || | ||||||||||| Sbjct 2257557 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2257498 Query 34617 GATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATC 34671 ||||| ||| || ||||| ||||| ||||||||| | || || Sbjct 2257497 AATCTTCGCCTTGACATTGTCGATA-----GTGTCCGAAGACTCCACTTCAAGAGTGATG 2257443 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || ||||||||| Sbjct 2257442 GTCTTGCCCGTCAATGTCTTGACGAAGATCTGCATG 2257407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729546299262